BAC Information

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BAC

Clone NameMSMg01-466N03
Chromosome2 (Build37)
Map Location 178,438,438 - 178,438,783
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039233, LOC626802, LOC329575, LOC433515, LOC665205, OTTMUSG00000016327, LOC100039263, LOC626848, 2810021G02Rik, Phactr3, Sycp2, Ppp1r3d, 9030418K01Rik, Cdh26
Downstream geneLOC100039368, LOC665264, LOC100043168, LOC100039413, Cdh4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466N03.T7 (MSMg01no466_n03.b1)MSMg01-466N03.TJ (MSMg01no466_n03.g1)
ACCAG550677AG550678
length885770
length of high quality
(start - end)
146 (75 - 220)346 (79 - 424)
definitionCHROMAT_FILE: MSMg01no466_n03.b1 PHD_FILE: MSMg01no466_n03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:28 2005CHROMAT_FILE: MSMg01no466_n03.g1 PHD_FILE: MSMg01no466_n03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CACTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGC
CGCGGAATTCATCATTTCGCCTCCAAATGACACTGGAATGGAGATTCAAG
ATTCAATTATCCTATGAGCCTGTAAGAGCTACTTTTTCTGATGCTGTGAT
AAACACTATGACCAAAAGCCACCTATGGAAGAGTTTATTTGGGATTAGGG
TTTCTAAGGGGTTAGGGTTGAGTCATGATAGTCTATACTAGATCATTAGG
CTTAGTGCTTGGTTGGACCCCGCGGCTGCAATATACTGACCGATTGTTTT
CCGTGGGCCGCACAGCCTCTGTTTTTTTTTTAATGCGCGCCCATCCCGCA
CGTCCACCACCGGCTATTTCTCTCCCCCTCTATTCTGATTTTACTGCTTC
TACATCTCTGGCCCTCGTCTCTGGTGTGACTCGCCCTCCTGCTTCCGCCC
TCTTCTTATCTTGGTGTTTCTGTATTTTTGTATTCCCTCGCTGTTTCCTT
TTCCATATATCCGACCTTGTGTTTTCTTCATATCTCTATCCCATTTTTTG
TTTTGTTTCATTATCCTTCTTTTCTTTATCTTTATTCCCTATTTTTTTGT
ATCTTTTCCCTTCTCCCTCTCACTTTTTATTCTTTTTGGTATTTCGCTTT
GTCCGATTATCGTGTAGCTTTATACTTTTTCTTCTTTTCCTTTTCGCTCC
CCCCTCGCCTTCTCTACTCACTACCGCCCTCTTCGCTGCCTTTTCTTCCC
GTTCTGTCACTTCCCATTTGTTGACTCTCTCCCCCTCCTCCTCTTATTGA
TGTTCCATGTCCTCCTACTTCGTCCTATATCCTATCGATCTTTACTCTAT
ATGGACTACGTCTGTTTGACTCTCTACTGATTGAG
CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTATTTCTGCCCATCCATGTA
TGTACTCGTTTCTCTGGAAAGTCATTCAACCTAGCAACACGTAGTAAGTA
ATCAGTGAGTTCCGTGTGGCAGACAGGAGCCCTGCTCTGGGGCCCAATTC
TCCAAAGGTGGAGGAGAGCCTCAGGGAGCTGACTTTGGAGGAACAATCAG
AACAAGTCTGATGGATGGGCACAGATGCTGAGTGAGGGGCGTTGCACAGC
AAGACTCCTGAGAACAACAGGAGGCTAAGTTTGGGGTTTGGAAAAAGGAG
GATTACACACAGTTTTGTGGAGGAAAGCAATAGGGTCAGGGGTCTGGGAA
CTAAACGGGTGACAACCTGTCAGCAGAGGTGCAGTGGCTAGGGGGAGCAG
AAGAACTGTGAGTCCCCGCTGATGTTATTAATCATCATCTTAACAGGATC
TAGAGTCACCTGGAATACTATTCTCAGGTTATTCCAGCGATGGGATTGTC
TGGCCTGTCTTTGTCTGAATTGATTAACTTTCGTCCTTCTATACATTTTT
TTTACGTTGTTCCTTTTTTTCTTAATATTCTCTCTCTTTCTATTTCTTTT
TGAATGTCTTCTGGTTATTTTTATACCCCTTATCCCCTCTTAACTAACTT
ATTCCATATCGCTTTATTTATCCATAATCTTCTTTTCTTTTATTTCCCCC
TACCCCGTATACACGAAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_n03.g1 MSMg01no466_n03.g1 CHROMAT_FILE:
MSMg01no466_n03.g1 PHD_FILE: MSMg01no466_n03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:28 2005
         (346 letters)



>mm_chr2_178438238_178438983
          Length = 746

 Score =  600 bits (310), Expect = e-176
 Identities = 337/346 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctatttctgcccatccatgtatgtactcgtttctctggaaagtcattcaacctagcaac 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 tctatttctgcccatccatgtatgtacttgtttctctggaaagtcattcaacctagcaac 260

                                                                       
Query: 61  acgtagtaagtaatcagtgagttccgtgtggcagacaggagccctgctctggggcccaat 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 acgtagtaagtaatcagtgagttccatgtggcagacaggagccctgctctggggcccaat 320

                                                                       
Query: 121 tctccaaaggtggaggagagcctcagggagctgactttggaggaacaatcagaacaagtc 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 tctccaaaggtggaggagagcctcagggagctgactttggaggaacgatcagaacaagtc 380

                                                                       
Query: 181 tgatggatgggcacagatgctgagtgaggggcgttgcacagcaagactcctgagaacaac 240
           |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 381 tgatggatgggcacagatgctgagcgaggggtgttgcacagcaagactcctgagaacaac 440

                                                                       
Query: 241 aggaggctaagtttggggtttggaaaaaggaggattacacacagttttgtggaggaaagc 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 aggaggataagtttggggtttggaaaaaggaggattacacacagttttgtgaaggaaagc 500

                                                         
Query: 301 aatagggtcaggggtctgggaactaaacgggtgacaacctgtcagc 346
           ||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 501 aatggggtcaggggtctgggaacgaaacgggtgacaacctgtcagc 546


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 746
Length adjustment: 9
Effective length of query: 337
Effective length of database: 737
Effective search space:   248369
Effective search space used:   248369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)