BAC Information

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BAC

Clone NameMSMg01-467C22
Chromosome2 (Build37)
Map Location 79,563,065 - 79,563,541
singlet/doubletsinglet
Overlap genePpp1r1c
Upstream geneLOC100040494, 4930401B11Rik, Ube2e3, LOC100040526, Itga4, Cerkl, Neurod1, Ssfa2
Downstream genePde1a, LOC668005, Prdx6-rs1, Dnajc10, Frzb, Nckap1, LOC624223, Dusp19, LOC672381, Nup35
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467C22.T7 (MSMg01no467_c22.b1)MSMg01-467C22.TJ (MSMg01no467_c22.g1)
ACCAG550953AG550954
length782751
length of high quality
(start - end)
354 (67 - 420)481 (71 - 551)
definitionCHROMAT_FILE: MSMg01no467_c22.b1 PHD_FILE: MSMg01no467_c22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:58 2005CHROMAT_FILE: MSMg01no467_c22.g1 PHD_FILE: MSMg01no467_c22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCAGAAATTTGCTAAGGCTGTTGGAAAAAAGTTTCTTTCCTTATGGAAGA
GTGTTGTGTGAGTGTGATACTTCTTAATTTTTAAAAATGATTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTAAGGCAGAGTCCAACATTGAGTGTCT
TCCTCAATTCCTCTCTCACTGACTGGATTGCATGCCTGGCGAGCTCCAGA
GACAATGCTGTCTTTGGATCCCCAGTGCTGGGTTTACACGACCACAATGC
CATGACCTTCTGTTTTGTATTTGGTTTGGTCTGGTCTGGTCTGGTCTGGT
CTGGTCTTGTCTTGCTTTGTGTTTGTTTGTCTTTTCTGTGGCATTGGAAC
TCAGGCCCTCATACCTGTCTGGCCAGCACTGTATAGAAACACTTCTCCAG
CATGACAGTTTATGCAAATTGGTGATATAAAAAAGATAAAAGGTATTTGC
CCCTTATATATTGTTAATCTGAATTTTATTTTTTATCTTTACTATATCAT
CATTATATCACCTTTACCTTTTCTTTTTTTTTCCTTTAACCCCCTCCCAT
TTCTCCAGTTATTTTTTATTCTTTTTTTATCCCCTTCTTATGCGGTTTCC
CTCTCACTATGCATTGCTCTTGTCGCACCCCCTTAATGTCCTCCCTCTTC
CCTTTTTACTCTCCTTATTTATTTTCCATCCTTCTATTCTTCGTTTCCCT
TTCACCTCTTTTTCCCCTATTTCTCTCTTTCT
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTTTTAAAAACCTACTTCCTTAGATAAAT
TATTTTAATCTGTGGCACAAAGTAACCTGGGGAACATACAATATGATTGC
CTACAACAAACCTGTTCTCTAAGGAGCTGAAAATAAGACAATTACAAAAT
AAAAAACTATTTTCTAAACCTACACATGCATGTACACACACACACACACA
TGTAGAAATGAAAAAGTGTGCATAGTTGTGTCATTGGTAGAACTAATGAT
TTCCTGGACGAGAAAATAGGAAGTGACAATAAGAAAGAAAACTGAGTTAA
TGTCATATAAACTCTGAGTGCTTGGGAAGGAATGGGTGGGATGGTAGAGT
CAGAAGGAACACAATACTTTGCATATTGAGAATAAGAGTTCTCATTCTAA
CTTCATATTAAATTATTTATAGCATTCCTGGAACTAATGCCTCAATAATG
GAGTCACAGGTATTAAAGGTATTAAAACCCAATTTTCTAGATCCTCTTAA
GAGTAAGCTCTACATACTTGTTTTTAAAATGGTGAATTTGCCCAATAATT
ATGACTTGCGAAAAGTTGGGCTTTATACCTAATAAAGGCTCCCTGGTAAT
GCCCCGAAACAATTATAGGCTCTTTATCCTTTAACGGCAACTTTTTATTT
TAGCATCTATTTCTTAACCCATTAAGTACGCCTTATTCTATTCCCATGGG
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_c22.g1 MSMg01no467_c22.g1 CHROMAT_FILE:
MSMg01no467_c22.g1 PHD_FILE: MSMg01no467_c22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:58 2005
         (481 letters)



>mm_chr2_79562865_79563741
          Length = 877

 Score =  911 bits (471), Expect = 0.0
 Identities = 477/481 (99%), Gaps = 4/481 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttttaaaaacctacttccttagataaattattttaatctgtggcacaaagtaacctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttttaaaaacctacttccttagataaattattttaatctgtggcacaaagtaacctgg 260

                                                                       
Query: 61  ggaacatacaatatgattgcctacaacaaacctgttctctaaggagctgaaaataagaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaacatacaatatgattgcctacaacaaacctgttctctaaggagctgaaaataagaca 320

                                                                       
Query: 121 attacaaaataaaaaactattttctaaacctacacatgcatgtacacacacacacacaca 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 321 attacaaaataaaaaactattttctaaacctacacatgcatgtacacacacacacac--- 377

                                                                       
Query: 181 tgtagaaatgaaaaagtgtgcatagttgtgtcattggtagaactaatgatttcctggacg 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 -gtagaaatgaaaaagtgtgcatagttgtgtcattggtagaactaatgatttcctggacg 436

                                                                       
Query: 241 agaaaataggaagtgacaataagaaagaaaactgagttaatgtcatataaactctgagtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 agaaaataggaagtgacaataagaaagaaaactgagttaatgtcatataaactctgagtg 496

                                                                       
Query: 301 cttgggaaggaatgggtgggatggtagagtcagaaggaacacaatactttgcatattgag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 cttgggaaggaatgggtgggatggtagagtcagaaggaacacaatactttgcatattgag 556

                                                                       
Query: 361 aataagagttctcattctaacttcatattaaattatttatagcattcctggaactaatgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aataagagttctcattctaacttcatattaaattatttatagcattcctggaactaatgc 616

                                                                       
Query: 421 ctcaataatggagtcacaggtattaaaggtattaaaacccaattttctagatcctcttaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ctcaataatggagtcacaggtattaaaggtattaaaacccaattttctagatcctcttaa 676

            
Query: 481 g 481
           |
Sbjct: 677 g 677


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 877
Length adjustment: 10
Effective length of query: 471
Effective length of database: 867
Effective search space:   408357
Effective search space used:   408357
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)