BAC Information

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BAC

Clone NameMSMg01-467D13
Chromosome2 (Build37)
Map Location 106,010,392 - 106,061,053
singlet/doubletdoublet
Overlap geneDcdc5
Upstream geneWt1, 0610012H03Rik, Rcn1, Pax6os1, LOC100043391, Pax6, Elp4, LOC100043394, Immp1l, LOC100043402, Dph4, LOC668765
Downstream gene9330126M15, C130023O10Rik, LOC677260, 2700007P21Rik, LOC383739, Fshb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467D13.T7 (MSMg01no467_d13.b1)MSMg01-467D13.TJ (MSMg01no467_d13.g1)
ACCAG550983AG550984
length731732
length of high quality
(start - end)		645 (40 - 684)634 (69 - 702)
definitionCHROMAT_FILE: MSMg01no467_d13.b1 PHD_FILE: MSMg01no467_d13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:01 2005CHROMAT_FILE: MSMg01no467_d13.g1 PHD_FILE: MSMg01no467_d13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,060,412 - 106,061,053)(106,010,392 - 106,011,025)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
TTAAATCTCTCAGAACTTCCTGGATGTCAGAGCAGCTTTGGTTCTAACGA
TGCGAGTCTCGCTGAGCTCCAGCCTGACAACTGGTCACATGACAACTGGT
CACATGACAACTGATCACTAGCTTTAAAAGACGAGTTACGATGGAAGCTT
AGAATTTTCTCTTCACTCCCAACTTCTGGGAAGGGAAAGAAAATAATGAA
AGTGATGTTACCAATCAATCATGGCTCCATATGAAACTCCTCACTGCAGG
CTCATGTGTCAGGAGGTGGATGGAGGTGGTTCCTAGACCCAGGACTCTGC
AGCCATTGTTCTATGTTCCTCAGGCCACCTGCTGCCTTTGTTGTATCCTT
AACAATAAATATGCCAGTGCTATAAAGAGCTCTCATTAAGTTCTGGAAGC
CAATTTCACGATTACTGAAACTGTGCTCCTGACACTGAAGTCAGCAGCAA
GGACTTGCCCTGTGGAGGGCAACTCTAGTTCAGTGTGGAAACTGAACTGC
GCAGCTGAACAACTGGCTGATGCTGTGGACTACTGGAAAACTGACGATGT
ACAAAGAATCCTCACATATCAAGGAGAAGTCTATACAGTAAAGAAATCAT
TCGGTTTCCTATATGAAGATATTATAAAGGAAGACCTGAGGTGGTTTGCA
CATCGACAGAGTGGTGGTGAGAGGAGCTGCT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCATTTTGATATTTTATATTGACTTCCTTATTT
CACTCACCTGTCTTTGTATGAGTATATTCTTTGTCTGAGTATATTCATGT
CTTCCTTGAGTTGTTTGAGCATAGTCATAATCATTCTTTTCAATTCTTTG
TCAGGACTGTCTTCCAGGTCATGCTCACAGGGGTCCATTATATGTGATTA
GCATTTTGTGGAAGAGACTTGTCTTGGATTTTGAAATTGCTTTTGTTTCC
GGACTTGAATGTTAACATTTGGGGTTTCTTTGTGGAGTGGAAGTTGAATG
AAGGCTTTACCTGTCTGTGCTGAGAGCTGGGGAACTAAGGAAGTGTGTGC
CAGAGCCCATGGTCCAGGGACCCTTTCCCTGTTGGTACTGACGGTGGGGA
GAAGGGAAAAGCTTTTGCCACATGCTCAGGCTCTGGAACCTGTGAAGTGT
TGGTGCTGAGGGCTGTTCAGGGAGGTAGAAAATTTGGTCCAAAAATTCAG
AATCTGAGTATTCTTGTCTATATCAGGAATTACCATAGTTTTATTGGTGA
ATTTAATATATTTACAATCAATGCTAATAATAAGCATGAGTTTGCACTGG
TTAATGCATTCCTCATAGTCTACTTGCTATATACATTTTTTTGCCATTTT
CTACAGNTTTTTATTTATTTATGTTAGTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_d13.b1 MSMg01no467_d13.b1 CHROMAT_FILE:
MSMg01no467_d13.b1 PHD_FILE: MSMg01no467_d13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:01 2005
         (645 letters)



>mm_chr2_106060209_106061253
          Length = 1045

 Score = 1195 bits (618), Expect = 0.0
 Identities = 636/642 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccttaaatctctcagaacttcctggatgtcagagcagctttggttctaacgatg 63
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 ggaagtccttaaatctctcagaacttcctggatgtcagagcagctttggttctaacgatg 786

                                                                       
Query: 64  cgagtctcgctgagctccagcctgacaactggtcacatgacaactggtcacatgacaact 123
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 785 cgagtctcgctgagctccagcctgacaactggccacatgacaactggtcacatgacaact 726

                                                                       
Query: 124 gatcactagctttaaaagacgagttacgatggaagcttagaattttctcttcactcccaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 gatcactagctttaaaagacgagttacgatggaagcttagaattttctcttcactcccaa 666

                                                                       
Query: 184 cttctgggaagggaaagaaaataatgaaagtgatgttaccaatcaatcatggctccatat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cttctgggaagggaaagaaaataatgaaagtgatgttaccaatcaatcatggctccatat 606

                                                                       
Query: 244 gaaactcctcactgcaggctcatgtgtcaggaggtggatggaggtggttcctagacccag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gaaactcctcactgcaggctcatgtgtcaggaggtggatggaggtggttcctagacccag 546

                                                                       
Query: 304 gactctgcagccattgttctatgttcctcaggccacctgctgcctttgttgtatccttaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gactctgcagccattgttctatgttcctcaggccacctgctgcctttgttgtatccttaa 486

                                                                       
Query: 364 caataaatatgccagtgctataaagagctctcattaagttctggaagccaatttcacgat 423
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 caataaatacgccagtgctataaagagctctcattaagttctggaagccaatttcacgat 426

                                                                       
Query: 424 tactgaaactgtgctcctgacactgaagtcagcagcaaggacttgccctgtggagggcaa 483
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 aactgaaactgtgctcctgacactgaagtcagcagcaaggacttgccctgtggagggcaa 366

                                                                       
Query: 484 ctctagttcagtgtggaaactgaactgcgcagctgaacaactggctgatgctgtggacta 543
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 365 ctctagttcagtgtggaaactgaactgcgcatctgaacaactggctgatgctgtggacta 306

                                                                       
Query: 544 ctggaaaactgacgatgtacaaagaatcctcacatatcaaggagaagtctatacagtaaa 603
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ctggaaagctgacgatgtacaaagaatcctcacatatcaaggagaagtctatacagtaaa 246

                                                     
Query: 604 gaaatcattcggtttcctatatgaagatattataaaggaaga 645
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gaaatcattcggtttcctatatgaagatattataaaggaaga 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space:   657225
Effective search space used:   657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no467_d13.g1 MSMg01no467_d13.g1 CHROMAT_FILE:
MSMg01no467_d13.g1 PHD_FILE: MSMg01no467_d13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:01 2005
         (634 letters)



>mm_chr2_106010192_106011225
          Length = 1034

 Score = 1187 bits (614), Expect = 0.0
 Identities = 629/634 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattttgatattttatattgacttccttatttcactcacctgtctttgtatgagtatatt 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 cattttgatattttatattgacttccttatttcactcacttgtctttgtatgagtatatt 260

                                                                       
Query: 61  ctttgtctgagtatattcatgtcttccttgagttgtttgagcatagtcataatcattctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttgtctgagtatattcatgtcttccttgagttgtttgagcatagtcataatcattctt 320

                                                                       
Query: 121 ttcaattctttgtcaggactgtcttccaggtcatgctcacaggggtccattatatgtgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcaattctttgtcaggactgtcttccaggtcatgctcacaggggtccattatatgtgat 380

                                                                       
Query: 181 tagcattttgtggaagagacttgtcttggattttgaaattgcttttgtttccggacttga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 tagcattttgtggaagagacttgtcttggattttgaaattgcttttgtttctggacttga 440

                                                                       
Query: 241 atgttaacatttggggtttctttgtggagtggaagttgaatgaaggctttacctgtctgt 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgtgaacatttggggtttctttgtggagtggaagttgaatgaaggctttacctgtctgt 500

                                                                       
Query: 301 gctgagagctggggaactaaggaagtgtgtgccagagcccatggtccagggaccctttcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctgagagctggggaactaaggaagtgtgtgccagagcccatggtccagggaccctttcc 560

                                                                       
Query: 361 ctgttggtactgacggtggggagaagggaaaagcttttgccacatgctcaggctctggaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgttggtactgacggtggggagaagggaaaagcttttgccacatgctcaggctctggaa 620

                                                                       
Query: 421 cctgtgaagtgttggtgctgagggctgttcagggaggtagaaaatttggtccaaaaattc 480
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 621 cctgtgaagtgttggtgctgagggctgttcagggaagtagaaaatttggtccaaaaattc 680

                                                                       
Query: 481 agaatctgagtattcttgtctatatcaggaattaccatagttttattggtgaatttaata 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agaatctgagtattcttgtctatatcaggaattaccatagttttattggtgaatttaata 740

                                                                       
Query: 541 tatttacaatcaatgctaataataagcatgagtttgcactggttaatgcattcctcatag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tatttacaatcaatgctaataataagcatgagtttgcactggttaatgcattcctcatag 800

                                             
Query: 601 tctacttgctatatacatttttttgccattttct 634
           ||||||||||||||||||||||||| ||||||||
Sbjct: 801 tctacttgctatatacatttttttgtcattttct 834


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space:   638976
Effective search space used:   638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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