BAC Information

Click to search

BAC

Clone NameMSMg01-467I17
Chromosome2 (Build37)
Map Location 130,015,319 - 130,205,177
singlet/doubletdoublet
Overlap geneTmc2, Nol5a, Idh3b, Ebf4
Upstream geneLOC100043431, Slc20a1, A730036I17Rik, LOC671466, Ckap2l, Il1a, Il1b, OTTMUSG00000015529, LOC668896, F830045P16Rik, Sirpa, Pdyn, Ppia-ps2_1620.1, Stk35, Tgm3, AU015228, LOC100043438, Tgm6, Snrpb
Downstream geneLOC668899, Cpxm1, LOC100043446, 1700020A23Rik, 4933425O20Rik, A930025D01Rik, Vps16, Ptpra, Mrps26, Oxt, Avp, 1700012O15Rik, Ubox5, Fastkd5, Prosapip1, 2600009E05Rik, Itpa, Slc4a11, 4930402H24Rik, LOC100043766, C030014O09Rik, LOC627316, Atrn, LOC100043768, Gfra4, Adam33, Siglec1, LOC100043457, Hspa12b, 1700037H04Rik, Spef1, Cenpb, Cdc25b, 2310035K24Rik, D430028G21Rik, Pank2, Rnf24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467I17.T7 (MSMg01no467_i17.b1)MSMg01-467I17.TJ (MSMg01no467_i17.g1)
ACCAG551228AG551229
length748748
length of high quality
(start - end)		239 (74 - 312)398 (73 - 470)
definitionCHROMAT_FILE: MSMg01no467_i17.b1 PHD_FILE: MSMg01no467_i17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:27 2005CHROMAT_FILE: MSMg01no467_i17.g1 PHD_FILE: MSMg01no467_i17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(130,204,939 - 130,205,177)(130,015,319 - 130,015,716)
sequence
ATAATTTGCGGGCGCTAAACGACCCACTAAATGCAGAGAATCCGCGGAAT
TCCATGTTTTACCTATGATCTAGTTAGAANAGGTCTGAAGTAAATTTCAC
TCAGACAGAATGGACTAAACTATGAGCGTAGGGCTTTACCTCATGCTACG
CTAACTCTTCTGGCTTCTGTGCCATGCAGTTGGAAGGCATCTGGCCCACA
TCACCATCATGCAGAACACTACTACCCTCTGATTCCTGATAGCATGCTGT
ATGGGCAGAGGAAGCACAGTGTAGTTAGCATTGCGAAGCTCGGTAAGGCA
TGAACTCTCAATGGCTAGTTTTAAACTCTGAATATGCAAGGTCTTATATT
TTGCTGAAATTTTAAAGGGAAAGGGCCAGCTAGGCTATCTACTGGAATAT
GGGGACTTATCACTATGCTGTGTTTCTTTTCACAAGGAAGGAAGCACAGG
ACTTAGATACAGAAACAGCCGCCTCCTCACCGAGGAACATGCTCAGTCTT
CAGAATTCTTGACTTTGTTCCATAAACTTAAGAGGATGAATATTCAGAAT
ATAAGCAGAATTTGTATGAAATATGTATAGGTTTTCCATCACTAATAAAT
GGATACAATATACCTATTAACATGGGGGTTTCACCAACGCCTTGTTCTTA
TTTTTTACGCCCCAATAACCATGCTATTCTTGTTATAAAATTTGCCCCTT
ACATCGCCTCTTTATTTGCCTTTCCTATTATTCCTCTTATTTCCTTTG

AATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACTAGATAACCTTTCTTTGTTCCTCTTC
CCAGGGTGACCACACTGAATAAGTCTTTCTCTGTCTTTCAGTATTATTTA
TCACTTTGATTGGCAGATTGAGCATTGAGGAACCATGCTTAGCTATAGAG
AAAGTTTAATCCAGGAACATCCAAAAACCTTCTGGGTCTCTGTGATCTAG
CTGGAATGCAGACATACTCTGGTTACAGTATCATCTGGCTGGAATGCAAA
CACACCCTTAGTACACACCTTTAAATCTCTAACAATGAAGGTAAGGTTAA
TTTGTAGAAGAAAGCAGCCATGTTTGAAAGTGATGTCTAATTGAGGGGCA
GACAAAGTGACAAATCAGAGAAAGATTTGACAGAATGAGTCGGAGATAGG
ATACGCCCAACTCTCACTAANACAACACAGGAAAGAGAGATGACTTTAAA
GAACAGCACCAAGTGAGTCAGGAAAGGAGGGCAGCTCAGTGCAGAGCAGT
TCCATTTCTTGCAGCCGAAGGAGTTTTTTCACAGAACAAGCATTCAGGGA
GAAGTTGAAAAAAACCCGTTTGAGCCATTCCGCCTTAAAAAGGAATTTTT
GACCCCAACACCTTGATTTTTTTGTAACACTTAAAGGTTCAAAAAAAAAA
TAAAAAGGGGGAGCCTTTTTCCCCTTTTAACCTTCTTAAAAAAACAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_i17.b1 MSMg01no467_i17.b1 CHROMAT_FILE:
MSMg01no467_i17.b1 PHD_FILE: MSMg01no467_i17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:27 2005
         (239 letters)



>mm_chr2_130204739_130205377
          Length = 639

 Score =  441 bits (228), Expect = e-128
 Identities = 236/239 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttagaanaggtctgaagtaaatttcactcagacagaatggactaaactatgagcgtaggg 60
           |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 439 ttagaaaaggtctgaagtaaatttcactcagacagaatggacaaaactatgagcgtaggg 380

                                                                       
Query: 61  ctttacctcatgctacgctaactcttctggcttctgtgccatgcagttggaaggcatctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ctttacctcatgctacgctaactcttctggcttctgtgccatgcagttggaaggcatctg 320

                                                                       
Query: 121 gcccacatcaccatcatgcagaacactactaccctctgattcctgatagcatgctgtatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gcccacatcaccatcatgcagaacactactaccctctgattcctgatagcatgctgtatg 260

                                                                      
Query: 181 ggcagaggaagcacagtgtagttagcattgcgaagctcggtaaggcatgaactctcaat 239
           ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ggcagaggaagcacagtgtggttagcattgcgaagctcggtaaggcatgaactctcaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no467_i17.g1 MSMg01no467_i17.g1 CHROMAT_FILE:
MSMg01no467_i17.g1 PHD_FILE: MSMg01no467_i17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:27 2005
         (398 letters)



>mm_chr2_130015119_130015916
          Length = 798

 Score =  762 bits (394), Expect = 0.0
 Identities = 397/398 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actagataacctttctttgttcctcttcccagggtgaccacactgaataagtctttctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actagataacctttctttgttcctcttcccagggtgaccacactgaataagtctttctct 260

                                                                       
Query: 61  gtctttcagtattatttatcactttgattggcagattgagcattgaggaaccatgcttag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtctttcagtattatttatcactttgattggcagattgagcattgaggaaccatgcttag 320

                                                                       
Query: 121 ctatagagaaagtttaatccaggaacatccaaaaaccttctgggtctctgtgatctagct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctatagagaaagtttaatccaggaacatccaaaaaccttctgggtctctgtgatctagct 380

                                                                       
Query: 181 ggaatgcagacatactctggttacagtatcatctggctggaatgcaaacacacccttagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaatgcagacatactctggttacagtatcatctggctggaatgcaaacacacccttagt 440

                                                                       
Query: 241 acacacctttaaatctctaacaatgaaggtaaggttaatttgtagaagaaagcagccatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acacacctttaaatctctaacaatgaaggtaaggttaatttgtagaagaaagcagccatg 500

                                                                       
Query: 301 tttgaaagtgatgtctaattgaggggcagacaaagtgacaaatcagagaaagatttgaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttgaaagtgatgtctaattgaggggcagacaaagtgacaaatcagagaaagatttgaca 560

                                                 
Query: 361 gaatgagtcggagataggatacgcccaactctcactaa 398
           ||||||||||||||||||||| ||||||||||||||||
Sbjct: 561 gaatgagtcggagataggatatgcccaactctcactaa 598


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 798
Length adjustment: 9
Effective length of query: 389
Effective length of database: 789
Effective search space:   306921
Effective search space used:   306921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |