BAC Information

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BAC

Clone NameMSMg01-467L15
Chromosome2 (Build37)
Map Location 129,369,696 - 129,370,006
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383791, LOC100043730, Gm355, Anapc1, Mertk, Tmem87b, 1600015H20Rik, Zc3h8, LOC100043735, LOC100043736, Zc3h6, LOC668894, Ttl, LOC100043738, Rpo1-2, Chchd5, LOC545461, LOC100043431, Slc20a1, A730036I17Rik, LOC671466, Ckap2l, Il1a, Il1b, OTTMUSG00000015529, LOC668896, F830045P16Rik
Downstream geneSirpa, Pdyn, Ppia-ps2_1620.1, Stk35, Tgm3, AU015228, LOC100043438, Tgm6, Snrpb, Tmc2, Nol5a, Idh3b, Ebf4, LOC668899, Cpxm1, LOC100043446, 1700020A23Rik, 4933425O20Rik, A930025D01Rik, Vps16, Ptpra
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467L15.T7 (MSMg01no467_l15.b1)MSMg01-467L15.TJ (MSMg01no467_l15.g1)
ACCAG551366AG551367
length724745
length of high quality
(start - end)
312 (320 - 631)170 (66 - 235)
definitionCHROMAT_FILE: MSMg01no467_l15.b1 PHD_FILE: MSMg01no467_l15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:41 2005CHROMAT_FILE: MSMg01no467_l15.g1 PHD_FILE: MSMg01no467_l15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACACCGCGGAATTC
TCCTGATTTTCATCCACTTGTCTCCATGCCAGCCACATTTGATTTTCTCA
CCAGAGACAGGCCACAAATGATAGACACAGGGCTTGCCTGAATAAAGGCA
CTTACTCCCAATGCAATGGAGTAGACAGAAGGACAGATACCCAGTCAGCC
ATGATACACAGACAGATACATAGACAGAACGCCATGTGACAACAGCTCAC
ATACTGTCCTCAGGATTCATTTCACATATATTAATTGATATGATGTAACC
CTCTGATCAAGTGCTGCTTAGAACAACTTGATAAGGTAGGTGTTATTTTT
TTAAATTATTCCCATTTTACTGATATGGTCCATGAGACAAAAGGGGGGTT
AAATTTGACCAAGGTCATCTCAGGTCAGTGGCAGACCTACATTGTAACAC
AGGGAACCACACTGCCTGGACAGAACCCTGAAAACTGTGATCATGGTATA
CAATTGCAATGGCATACACTCAGTTTTAGACATTTGGATGCAGATGATGC
ACCCTGATGAAATAAAGACCGTCTTACAGACCCACAAGGTGGGACAAAGA
TACTCACGCTTCCCAGTGAGGCTGGCTAAGAAATCACTGTTTGCTTCAAG
GAAGCCAGATCTTAATGATTATATATACCAAGGCACATATGCACACAGAG
GTAGATACATTTATGTGCACATAT
TGTGTGTAGGCTGGCGGCGCCTGGTTTCAAATTTAGGTGACCTATAGAAG
GTTTCAGACATTCCATAGTGGCAGGGCTAATTTATATGTGTATGTGTGTG
AATGAATTGCCGAGTGTGCACTGTGTGTGTGGTGTGTGAGTGAATTGATG
AGTGTACACTGTATGTGTGTGTGTATGGTGGTCAGAAGACTGCTTCTCAG
GATTCAGGTCTCCCCTTAGAATTTATCCCTGAAGCATTTTCTCACTTCTT
GTTTTTGCTGCTGTGTTGCACATTTGTACTTCCCACTGTGGCTTGGAGGA
GCTTTCTGCTTTCTGAGCACCACTACATGTGCTTGCTTATTTATTTTTCT
TGCCCTCTGCGATTGAGCTCTGGCCTATCAGGCCTGTGTTGTCCTACTTT
TACCCACCCACTCTCCTCTCCATTCTATATTAAACAAATTCTTTAAATAC
TTTATCTTATTAATATATACTCGCTCCATTATGAACACTTGTAATTTTCT
ATCCTTTTTATCCACTACCGTACTAACCGATTTTACATGTTTGCCATCCA
CTCCTTCCATTGGCTCGTTTTTCCCCAATTCCTCGTTCTCTTCCCCTTTC
TTCTTGACTTTCTGCCATACTCCTAGACTCTTCTTTTTTTTCTTTTCTCT
ATCAACTTTCTCTCTTCTCTTCCCGTCTCCGTCAGTTCCTTTATTCCTTC
ACCTCCTCCCTCTCCCTCTCTCTTCCCTTCTCTCCTTTTCTACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_l15.b1 MSMg01no467_l15.b1 CHROMAT_FILE:
MSMg01no467_l15.b1 PHD_FILE: MSMg01no467_l15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:41 2005
         (312 letters)



>mm_chr2_129369362_129370073
          Length = 712

 Score =  565 bits (292), Expect = e-165
 Identities = 307/312 (98%), Gaps = 1/312 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaacaacttgataaggtaggtgttatttttttaaattattcccattttactgatatggt 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 645 agaacaacttgataaggtaggtgttattttttttaattattcccattttactgatatggt 586

                                                                       
Query: 61  ccatgagacaaaaggggggttaaatttgaccaaggtcatctcaggtcagtggcagaccta 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 ccatgagacaaaa-gggggttaaatttgaccaaggtcatctcaggtcagtggcagaccta 527

                                                                       
Query: 121 cattgtaacacagggaaccacactgcctggacagaaccctgaaaactgtgatcatggtat 180
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 526 cattgtaacacagggaaccacactgcctggacagaaccctgaaaaatgtgatcatggtat 467

                                                                       
Query: 181 acaattgcaatggcatacactcagttttagacatttggatgcagatgatgcaccctgatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 acaattgcaatggcatacactcagttttagacatttggatgcagatgatgcaccctgatg 407

                                                                       
Query: 241 aaataaagaccgtcttacagacccacaaggtgggacaaagatactcacgcttcccagtga 300
           |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 406 aaataaagactgtcttacagacgcacaaggtgggacaaagatactcacgcttcccagtga 347

                       
Query: 301 ggctggctaaga 312
           ||||||||||||
Sbjct: 346 ggctggctaaga 335


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)