BAC Information

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BAC

Clone NameMSMg01-467O14
Chromosome2 (Build37)
Map Location 144,562,063 - 144,562,180
singlet/doubletsinglet
Overlap geneDtd1
Upstream genePcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik, LOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561
Downstream gene1700010M22Rik, Slc24a3, LOC627312, OTTMUSG00000015643, LOC433482, LOC100043810
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467O14.T7 (MSMg01no467_o14.b1)MSMg01-467O14.TJ (MSMg01no467_o14.g1)
ACCAG551506AG551507
length747729
length of high quality
(start - end)
118 (66 - 183)336 (318 - 653)
definitionCHROMAT_FILE: MSMg01no467_o14.b1 PHD_FILE: MSMg01no467_o14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:55 2005CHROMAT_FILE: MSMg01no467_o14.g1 PHD_FILE: MSMg01no467_o14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTTGCGTGCGCTATACGACTCACTAAATGCAGAGCATCCGCGGAATTCT
TTTATGTGTCACTTATTCTTTTGCTTTCTAACCGTAGAGGTGGGTATACT
AGTTTCTGAGTGCTTACATGTTCTGGAGTCACCACAGTTGACAGAGTGTT
TGGGTCATCATCTTTTATGTTTAGAGCCTGGGACATTGCCGTGGTGGTTG
GTTGGTCTTGTTCCATGCTTCTTTTCATTTACGTACTTGTCTGTTCCATG
CGGTCATTCTGTCATCTTTTCGGCACAGTTGATCAGGGGCTTACTATGTC
AGGGCGTTTTTTTTTTCTGTCGCTGGCGTGGTATGTAATAGACTTCCCTC
TTTGTGTCTATTATCTTCTCCTCTGTGTGTACTTGATTCTTTCGAGGTTC
TTTCCTGATTCCACCGTTTCTGCTTTTGCTGCTCCTATCTTGATCTTTCT
CCCTACTTCTCCCCCCCTACTGATTTTGCCTTTCCCTGTGTTCCCCTTCC
TTATATCTGTTCTTTTTTATCGCTTTTTCTTTTATCCTCCTACCACTCTT
TGCACCCGCCATTTCTCTTTTTACTATTTGTTTCCTTCTTTGTTCTGCTT
TTTTTTACCTGTTTTCTTTCCCTCTTCTCCTTCTGCATTTCTATTTCCTC
CTTCTTTTTTCCCCACTGTTACCCCCCTCCCTCTCACTTTTCTCTATCAC
TCCACATCTCTTTTTTTTCCCAACTCCCTTCTTCTATTTCTGTTTCT
ATGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATTTTAGAATTAATATACTTTTCCTGTAATTA
TTAAATATATATATAGCAATCATCAGGTAATAGCCCATCCCTTTTAAGCA
GATCTACAAAGATGTACTGTCTTATAGTGATGCTATATAGATGAATAGAT
GTTGTCTTAATTCTTAATGATATTATAAGAATTCCTAAAATTATATCAGT
GTTTATTAAGCTCTTTTATATTGGGACTGCTATTAGATCCTTTTCTGATA
GTCAAAACTGCTTTGAGAACTCTATCAGTCTCCCATCTGTCACCAGTTAA
ATTGCCTCTTAGATAGTAACCAGACTTTTTCCTACTCATGGCACATTGCA
AGAGGTTGTAAAACAACCAGAGGTCATAAAAAGGGAACTAACAATTTATT
ACAGTTGCTAGAACAGAAGATAAAATATTGAATGGGTTTATCTGTACAAA
GCTTCATTAATTACAGTTATCATTTTTAACTTTCAATGAACCTGTGGAGT
AGTGACAAGTGATGGACATTTAGCCAGATAATTATTCCTAATGGATATGC
ATGTAAATATTCTCTGTTGTAAACTTCAGTTTATGATTTGATTTTTTTGT
GTGAACTTGTGATGAACTTTTTAACATGTGATCATGGATTCTGAAAGATG
TATAAGTACTAAGGATAAAGAGTAGAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_o14.b1 MSMg01no467_o14.b1 CHROMAT_FILE:
MSMg01no467_o14.b1 PHD_FILE: MSMg01no467_o14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:55 2005
         (118 letters)



>mm_chr2_144561863_144562380
          Length = 518

 Score =  213 bits (110), Expect = 3e-60
 Identities = 116/118 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcttttgctttctaaccgtagaggtgggtatactagtttctgagtgcttacatgttctg 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcttttgctttctaactgtagaggtgggtatactagtttctgagtgcttacatgttctg 260

                                                                     
Query: 61  gagtcaccacagttgacagagtgtttgggtcatcatcttttatgtttagagcctggga 118
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 gagtcaccacagttgacagagtgtttgggtcatcatcttttatgtgtagagcctggga 318


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 118
Length of database: 518
Length adjustment: 8
Effective length of query: 110
Effective length of database: 510
Effective search space:    56100
Effective search space used:    56100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)