BAC Information

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BAC

Clone NameMSMg01-468C23
Chromosome2 (Build37)
Map Location 169,817,730 - 169,818,144
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668954, Tshz2, LOC100043737
Downstream geneLOC100043910, Zfp217, Silg111, LOC100043739, Bcas1, LOC228916, Cyp24a1, Pfdn4, 4930470P17Rik, Dok5, LOC668955
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468C23.T7 (MSMg01no468_c23.b1)MSMg01-468C23.TJ (MSMg01no468_c23.g1)
ACCAG551716AG551717
length782902
length of high quality
(start - end)		415 (79 - 493)99 (80 - 178)
definitionCHROMAT_FILE: MSMg01no468_c23.b1 PHD_FILE: MSMg01no468_c23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:18 2005CHROMAT_FILE: MSMg01no468_c23.g1 PHD_FILE: MSMg01no468_c23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCATCTCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGNAG
ATGGGNGGAATTNTCACGCCTTTCCTCAGCTGTCTCTAAGCTCTGCAGCA
ACTAGAGCTCTCTCAGGAGGATGGGGACCACAGAGCTGTTCCTTGCTGCT
TCTGGGTCATCCAGAATCTTCTGACTGTAAGACATTGTCTGTGAAGGGCT
GGTGAACCTTTAGCTTCTAGGGCCTAACAGTCCCTATTGCTCTTAAGCTC
TCCCTTCCCGTCTATAAATAATCCATAAAAGAATTATGTCATCCGTTAAG
TCCCAGCTCCAAAACTTGTCTGATCCCTCAGGCCACATGTTGCTGACCCC
TGGGTTAGGTGACATCTTCGGTGTGCATGTTCTCCATTTCCACCAAGGAG
CACAAGGAAGCAGTGTCCTAAAGTTGAGCAAAATTCCAGCCTCCGTGCGT
TCAAAAGACAAAATAACAGAGTTTGATCCAGGCATGGCGCCCAACCTGTA
ATCTCAGTAGAGAGGGGCAGGGAGATTCAAACTCAAGGCTAACCAGCCTG
AAATCTGCCAGAACCCCATCTCCCAAAAACCCACCAAACAGAGAACTTAT
GACTACTCCCAAAGAAAAAGGGCTTTCTAAACCTCCCCCAACCTGGAAAT
GGTTCCCTGTACCAAAGGGCCCGCCCCAAAACTTAAAGCCCCGGGTTTCC
TCCCCCCAACCCCCATTGTCTAAAAGAATAATTTTTCTAAAGTTGTTCTC
TAACTTACCCCGGGCTTTAACGGGGGGAGGAA

NACCCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACAGAGATCCATCTGTATGTC
TCCCAAATGCTGGAATTAAAAGCACCTCTGCCCAACTCTGATTTTATCTT
TTATTTATGGGTGTGAGTATTTCTGTGTGGGGGTGTGCTTTTTCTTTTTT
GTTGTTCCTGTTTCTTGTTTGGTGGGCTGGTTTGTGTTCTTTGTCTTTGT
TGGGCGCACGATTTTTTTGGGGTTGCTCTGTTGTTGTGTTTTCTGCGTTT
TCGTTCTTCTCGTTTGTGTTTCGGCGGTGTTTTTTTTTTTGGGTATGCAT
GCGTCTTGTCGTCTGGTTTTTTTTTGTTGCCTTTTTTTCTTGTGTTTGTG
TTTTTTTGGGTTCTTATGTTGTTGTTGGCCCCCCCCCTCCTTCTTCTTTG
CTTTCTTTGCTTTTTTTTCCTTCCCGTGTTTTCTTCTTTTTCTTTTGTTC
TTGTTGTTCTTTTATTCCTTTCTTTTTTGTTTCTCTCTTCGTACTTCTTC
TTTTACCTGTTTTCGCCCTTTGTCTTTTCTGGTTTTCTTTCTTCCTCCCT
TCCGATTTTTCTCTTCCTCCCTTTTTTCGTCTTCTTTTTGCTTTCTTCTT
TTTTTCTTCGTGTTTTCGCTTTATTATTGCTGCCGTTTTTGTTTGTTGCT
TTCCTCGGTTTCTCTTACCGTTGCTTTCGGCTCGTTGCCTCTTTTGTGTT
TCTCTCTTCTGCCTGTGTTTTTTCTTCGTTTTCTTTCTCCTTTTTCTTTT
CCTTCTCTTCTTTTTTTCGTCTCTTCCTTCTTTTGTTTCTTTCTCTTGTT
CTGTCTTTTTCCTGTTTTCTGCTCGGTTGGTGTATATGTGTTCGATTGTC
CN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_c23.b1 MSMg01no468_c23.b1 CHROMAT_FILE:
MSMg01no468_c23.b1 PHD_FILE: MSMg01no468_c23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:18 2005
         (415 letters)



>mm_chr2_169817530_169818344
          Length = 815

 Score =  756 bits (391), Expect = 0.0
 Identities = 409/415 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gctgtctctaagctctgcagcaactagagctctctcaggaggatggggaccacagagctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gctgtctctaagctctgcagcaactagagctctctcaggaggatggggaccacagagctg 260

                                                                       
Query: 61  ttccttgctgcttctgggtcatccagaatcttctgactgtaagacattgtctgtgaaggg 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 261 ttccttgctgcttctgggtcatccagaatcttccgactgtaagacattgtcggtgaaggg 320

                                                                       
Query: 121 ctggtgaacctttagcttctagggcctaacagtccctattgctcttaagctctcccttcc 180
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctggtgaacctttagcgtctagggcctaacagtccctattgctcttaagctctcccttcc 380

                                                                       
Query: 181 cgtctataaataatccataaaagaattatgtcatccgttaagtcccagctccaaaacttg 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgtctataaatagtccataaaagaattatgtcatccgttaagtcccagctccaaaacttg 440

                                                                       
Query: 241 tctgatccctcaggccacatgttgctgacccctgggttaggtgacatcttcggtgtgcat 300
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctgatccctcaggccacacgttgctgacccctgggttaggtgacatcttcggtgtgcat 500

                                                                       
Query: 301 gttctccatttccaccaaggagcacaaggaagcagtgtcctaaagttgagcaaaattcca 360
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 gttctccatttccaccaaggagcacaaggaagcagtgtcctaaagctgagcaaaattcca 560

                                                                  
Query: 361 gcctccgtgcgttcaaaagacaaaataacagagtttgatccaggcatggcgccca 415
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcctccgtgcgttcaaaagacaaaataacagagtttgatccaggcatggcgccca 615


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space:   327236
Effective search space used:   327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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