BAC Information

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BAC

Clone NameMSMg01-468E20
Chromosome2 (Build37)
Map Location 58,624,357 - 58,624,736
singlet/doubletsinglet
Overlap geneUpp2
Upstream geneGalnt5, A330104H05Rik, LOC667026, Pscdbp, LOC100042926, Acvr1c, LOC667062, Acvr1, LOC674940
Downstream geneBC062650, Pkp4, LOC625354, 2310032F03Rik, LOC100038999, LOC100039016, Tanc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468E20.T7 (MSMg01no468_e20.b1)MSMg01-468E20.TJ (MSMg01no468_e20.g1)
ACCAG551806AG551807
length788817
length of high quality
(start - end)
380 (72 - 451)369 (76 - 444)
definitionCHROMAT_FILE: MSMg01no468_e20.b1 PHD_FILE: MSMg01no468_e20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:28 2005CHROMAT_FILE: MSMg01no468_e20.g1 PHD_FILE: MSMg01no468_e20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCG
CGGAATTCACACAATTTTCTTTACTGAAAAGCGGCAAGTGCATTTGCGCA
GAGGTCTTGTGATGTGTTCTGCTCTCGTTCAGAACCTGACAGCTCTTCTG
GACACTGTCTAAGATGTGATGCAAGCAGAGTGATTCTCTGAGCAGTTCCC
ATTCATGACAAGCACTTAGGAGGGTATCTGTACATGGCCACCCATTCTGC
CTGACTCGGCTTTCCACACAGGGCTATATTCTTAAGCAAAAAGTCCAAGT
CTGTGATGTGTTTGGATGTGGTAGTCCTCTTGAGAGGCATAAGAGACAAT
GAGTTATCCCTGCATAGGTATGGCAATTCTGAAGAGTTCCGTTGTAAAAT
GCTCTTGATGTTAGGGAATGTCGCAACTCACTGATCCCTCAGGTGACTCA
GATTATCCCGGGATAGAATGTCCCGAGAGCAGGGAACATGGGGGAACCAA
AGAAAACATGCATGATAATACCAGTGTGCCAGGGAAATGGATCGCATGAG
GTCACCAGTTGCTGAAAACCGTTTTTGCTTCTAATAAAAAAACCCATTCC
TTTTTAATTTGTTCCTCCCTAAAAAATTTTATAACCCCTTCCTTCTAATA
AAAACTAATTGGCCCTCGTTTTTTTTCTTCATAATTTTTACCTTAATACT
CTTCTTCCTTATATTATTTATTCCTCTTCCTTTTCTATACCCGCGTTTTT
AAACAGACATTTTCTTTTCTCCTCCCCCTATTATTATG
NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACATTACTCTTGGAAGCCCATTGAA
GTTTCTCTGAAATAGACCATACCCTGGGTCACAAGGCAAATGTCAAATTT
AGGAAAATGAAATAACTCAATGAGCGGGACTCAGCAGAACTTAGGAAATT
AGTCTGAACAGGTTAGAGGGTGCGCCAGAGAACCGGACAGCTTCTGGGAC
GGGCAGAAGCACAGAGCCGCTGAGGCAGCAGCCTTGGCGGGCCGCAGACA
ACCGGCCACCATCCAGACCAGAGGTACTTGTGTCCGCCTGGCTCGGGAGA
CGGCCTCAGCCTCAGGAGCAGCGGTCACCATCTTGGTTCCAGGACTCCCT
GGAACTTAGGATTTTAGTCTGCACAGGTGAGAGTCTGCACCACAGAAGCT
GGCAGCTTCTGGGAACTGCCAAAGCAACACAGCTTCTGAGAGAGGGCCTG
TTTTGGGCCTTCTTCTTCGACCAGGAGGAGGTCCAAAAAACAAATATCTG
CGCACCTTCCCCTGTAAAAAAGTTTGCCAGCTAAAAAATGGTCTTGATCC
CCTGAACCTTCAGGTAAGGATCTTGTCTCCCTCGCTCCGCTTGGTAGACC
CTTTTTAAAATTTCCCCCATTAATCTTTCTTCTATTTGTAGGCCCACCTA
TATTTCTCATTTTTCCCAATATATCCCTAATGCCGTAAATGCTCTAACTG
ACATAACTCTCTCCAATATGCGACATCTTATAATCCTTCTCTTTGCCTAA
TATATCCGACTTCTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_e20.b1 MSMg01no468_e20.b1 CHROMAT_FILE:
MSMg01no468_e20.b1 PHD_FILE: MSMg01no468_e20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:28 2005
         (380 letters)



>mm_chr2_58624157_58624936
          Length = 780

 Score =  712 bits (368), Expect = 0.0
 Identities = 377/380 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tactgaaaagcggcaagtgcatttgcgcagaggtcttgtgatgtgttctgctctcgttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tactgaaaagcggcaagtgcatttgcgcagaggtcttgtgatgtgttctgctctcgttca 260

                                                                       
Query: 61  gaacctgacagctcttctggacactgtctaagatgtgatgcaagcagagtgattctctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaacctgacagctcttctggacactgtctaagatgtgatgcaagcagagtgattctctga 320

                                                                       
Query: 121 gcagttcccattcatgacaagcacttaggagggtatctgtacatggccacccattctgcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcagttcccattcatgacaagcacttaggagggtatctgtacatggccacccattctgcc 380

                                                                       
Query: 181 tgactcggctttccacacagggctatattcttaagcaaaaagtccaagtctgtgatgtgt 240
            ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 cgactcggctttccacacagggctatattcttaagccaaaagtccaagtctgtgatgtgt 440

                                                                       
Query: 241 ttggatgtggtagtcctcttgagaggcataagagacaatgagttatccctgcataggtat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttggatgtggtagtcctcttgagaggcataagagacaatgagttatccctgcataggtat 500

                                                                       
Query: 301 ggcaattctgaagagttccgttgtaaaatgctcttgatgttagggaatgtcgcaactcac 360
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggcaattctgaagagttcagttgtaaaatgctcttgatgttagggaatgtcgcaactcac 560

                               
Query: 361 tgatccctcaggtgactcag 380
           ||||||||||||||||||||
Sbjct: 561 tgatccctcaggtgactcag 580


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 780
Length adjustment: 9
Effective length of query: 371
Effective length of database: 771
Effective search space:   286041
Effective search space used:   286041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)