BAC Information

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BAC

Clone NameMSMg01-468H22
Chromosome2 (Build37)
Map Location 144,914,828 - 144,915,273
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1, 1700010M22Rik
Downstream geneSlc24a3, LOC627312, OTTMUSG00000015643, LOC433482, LOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468H22.T7 (MSMg01no468_h22.b1)MSMg01-468H22.TJ (MSMg01no468_h22.g1)
ACCAG551953AG551954
length788781
length of high quality
(start - end)		452 (74 - 525)445 (80 - 524)
definitionCHROMAT_FILE: MSMg01no468_h22.b1 PHD_FILE: MSMg01no468_h22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:44 2005CHROMAT_FILE: MSMg01no468_h22.g1 PHD_FILE: MSMg01no468_h22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCATATCCCTTCCGCTGTGATTCTCAGCCCAGGTCAACCCCAT
TGATTCCTGAGAGTCTCTCCCATCCCAGGAGTCAGGCACATCCTTGAGTT
GCCCCTACTCCACCTCCACCAGCAGCAGATTTCTATTCATTCTTCTGGCC
CTCTCTCCTGTCTCTCCCCACACCTGATCCTGAACACCCTCCCACTACCC
TCCCTATCCCTTCTCCCACCCAGATCTCTTTTTCCTTCTGCCTCCTAAGA
CTATTTTATTTCCTCTTCTAAGTGAGATTCAAGCATCCTTACTTGGTCCT
TCTTTCTGGTTTAGTTTCTTTGGATTTTTGAATTATAGCATGGGTATCCT
GTACTTTTTGGCTAATAACCACTCTAAGTGAGTATATATTGTGTATGTCC
TTTGGGGTCTGGATTATCATACTCAGAATGATAGCCTTAAATTCCACCCA
TTTGCTTGCAAAATTCATAATGCCCTTGTTTTTAATAGCTGAATAGTATT
TCATTGTGTGTAGATGTAGCACATTTTCTTTATCCATTCTTCAGTTGAGG
GAAAACTAAGGTGGTTCCTAGTTCTGAATATTATTAATAAAGCTGGTATG
AAAATGGTGGAAAAAGGGTCCTGGGGGAAAAGGGGGACTCTTTTGGGGAT
AGGCCCCGGGGGGGGTAAAAGGGGTTTTGTGAATGAACAATTTCCATTTT
TCCTTTGGTTCGAACTTTCCCAAAAAGGGGGTTATCTT

NNNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGCAATTTGAATGGTAAAA
AAAGTGCAGTCCAAGCCATTTGCATCAGTCCAAATCAGTAGAGTGCCTTC
CAGCACTGTGCATTAGCAGCAAGCAGCTGTACTTGCCATGTGGTTTCCTC
AAGGTGTCTGTAAGAGTATTCAAAGCAGCCAATGCACTAGTATGAGGGTA
GTCTGATTGGCTGTTTGCTTTTAGCCTTTTGGTTAAGGTGACTGGAATAC
GACCACCAGACTTTTTCAACCACAGATGGAACACAGGGCCCCTGTGACGC
CTGTTAGATACTAATAATATGAATGAGTGGATGAACATATTCATGAACAC
TAGCTGTATAAAATACCTTTCCCAGCATCACATGGTAGAATAGCAGAGTT
CTGCCTCTTCTCCTTATGTCCCCTGCCAGTGCTCAACCCCAGCTGATATC
TTTGTAGTGCTGGCTTCTTCCTGACCCAACAGTACCAATGTAGGTTCTTT
GTCTTCCATGAGAAGCAGTATGTGCTGGACACTGTGTAAGGAGCTTATCC
AAGGGATTGTTCCACCCTTAGGAAGTCACAAAATTCAGCCACCAAAATTC
CGGAAAAATATTGTTTAATGCCCTAAAATTTTAAATCCCCAGCCGGGGTT
TATTGAATTTCACAATGGGGGGGTGGGAAAGCCGCCCCTTTCCCCTCACA
AAAATTCACTTTTGGGGGTTTATTTATTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_h22.g1 MSMg01no468_h22.g1 CHROMAT_FILE:
MSMg01no468_h22.g1 PHD_FILE: MSMg01no468_h22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:44 2005
         (445 letters)



>mm_chr2_144914628_144915473
          Length = 846

 Score =  839 bits (434), Expect = 0.0
 Identities = 443/446 (99%), Gaps = 1/446 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgcaatttgaatggtaaaaaaa-gtgcagtccaagccatttgcatcagtccaaatcag 59
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 actgcaatttgaatggtaaaaaaaagtgcagtccaagccatttgcatcagtccaaatcag 260

                                                                       
Query: 60  tagagtgccttccagcactgtgcattagcagcaagcagctgtacttgccatgtggtttcc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagagtgccttccagcactgtgcattagcagcaagcagctgtacttgccatgtggtttcc 320

                                                                       
Query: 120 tcaaggtgtctgtaagagtattcaaagcagccaatgcactagtatgagggtagtctgatt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaaggtgtctgtaagagtattcaaagcagccaatgcactagtatgagggtagtctgatt 380

                                                                       
Query: 180 ggctgtttgcttttagccttttggttaaggtgactggaatacgaccaccagactttttca 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggctgtttgcttttagccttttggttaaggtgactggaatacgaccaccagactttttca 440

                                                                       
Query: 240 accacagatggaacacagggcccctgtgacgcctgttagatactaataatatgaatgagt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 accacagatggaacacagggcccctgtgacgcctgttagatactaataatacgaatgagt 500

                                                                       
Query: 300 ggatgaacatattcatgaacactagctgtataaaatacctttcccagcatcacatggtag 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggatgaacatattcatgaacactagctgtataaaatacctttcccagcatcacatggtag 560

                                                                       
Query: 360 aatagcagagttctgcctcttctccttatgtcccctgccagtgctcaaccccagctgata 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 561 aatagcagagttctgcctcttctccttatgtcccctgccagtgctcaaccccagctggta 620

                                     
Query: 420 tctttgtagtgctggcttcttcctga 445
           ||||||||||||||||||||||||||
Sbjct: 621 tctttgtagtgctggcttcttcctga 646


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 846
Length adjustment: 10
Effective length of query: 435
Effective length of database: 836
Effective search space:   363660
Effective search space used:   363660
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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