BAC Information

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BAC

Clone NameMSMg01-468J20
Chromosome2 (Build37)
Map Location 30,618,406 - 30,618,860
singlet/doubletsinglet
Overlap genenone
Upstream geneOTTMUSG00000012686, Trub2, Coq4, Slc27a4, Urm1, LOC100041002, Ceecam1, Odf2, Gle1l, Spna2, LOC665532, Wdr34, Set, Pkn3, Zdhhc12, Zer1, LOC100041114, Tbc1d13, Slc39a1-ps, Endog, D2Wsu81e, Ccbl1, 1700084E18Rik, Lrrc8a, Phyhd1, Dolk, Nup188, Sh3glb2, 5730472N09Rik, Dolpp1, Crat, Ppp2r4, Ier5l, Cstad
Downstream geneEG665645, 1700001O22Rik, 2610205E22Rik, Asb6, Prrx2, Ptges, Ppia-ps2_387.1, Tor1b, Tor1a, BC005624, Usp20, Fnbp1, Gpr107, Freq, LOC622345, LOC670182, LOC665700, BC034076, Ass1, Fubp3, LOC100041465, Prdm12, Exosc2, Abl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468J20.T7 (MSMg01no468_j20.b1)MSMg01-468J20.TJ (MSMg01no468_j20.g1)
ACCAG552045AG552046
length840777
length of high quality
(start - end)
98 (50 - 147)454 (79 - 532)
definitionCHROMAT_FILE: MSMg01no468_j20.b1 PHD_FILE: MSMg01no468_j20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:54 2005CHROMAT_FILE: MSMg01no468_j20.g1 PHD_FILE: MSMg01no468_j20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GATCTATATTTGCGGCGCTATACGACTCCTATTTTCACACATCCGCGGAA
TTCTTCCTCCTTTCCATTTATCTTGGTAAATCTGAGTTCACTGTGCAAGC
AAGTGTGTGTGTGTGTGTGTGCGTGTGTGTGAATGAGAGAGACTGGGAGG
GAGGCATGTTTTTCTCTTGTAGGCTTCCTCCTTTTTCCCTCCTCCCCCCC
TTCTCCCCCTCTCCCTCCCCTCTTTCCCTTTTCCCTCTTTTTCTTTTCTT
TTTTTCCCTCTCTTTCCCCCTTCTCCTCCCCTTTTCCTCCTCCCTAACCT
CCTCTCCCCCCCTTCTTCCCTCTCTTTCCTCACCTCCCGTTCCTTTCCCC
CTTCTTTTTTCTCCCCCCTTCCCCTTCTCCCACCCTCCTCCCTCGCTTTT
CTCTCTCCTTTTTCCCCTCTCCCTTCTTTTTTCCTCCCCTCCCTCCCTCC
CCTTTTCTTCTCTTCTTCCCCCTCCTCCCTTTCCCTCCTTCTTCTTTCTC
CCCCCCTCTCTCTTCCCTTCCTTTTCTTCTCTCCTTTCTCTCCTCTCTCC
TTCCTCCTCCCTCTCCCATCCTCCCTCTCCCCCTCACTCTCCTTCCCTCA
TACTTTCTTCTCTTCCCTTTCTTCCTTTCTCCTTTCCTTCCTTCCCCCTT
TCCCCCTCTCCCTTCTTCTCCTCCCTCTTCCTTTCCCCTCCTCCCTACTC
CTTACCTCTTCCCTTCCTCTCCCTCCCCCTCTCCCCCTCTCCCCCTCACT
CTTCCCTTCTTCTCTACTTTATCTTCCCCCCCCCCTCTCCTCCTCCTCTC
TCTCTCTTCTCTCCCTCCCTTTCAACCCCTCCCCCCCTCC
NCCGAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAATAAAGAAGCCAAAAAACATA
CCTGCACACCTCCCAGAGGCTCAACCAACCCCAAGCACAGGCAATGTTTG
GCTGGAGGTAGAGGGTAAGGGCAAGGCTGAGTTCGATAGTAAGGCCTTCA
TGGAAGAGGCCAAGGGCACATGGACTACTTTTCTGTTGCTTTGATAAAGC
ACCATGACCAAGGCAACTTATAGAAGAAAGGGTTTATTTGGGTTCACAGT
TCCAAGGGGATAGGAATTCAGTGTGGCATTTTTCATGGCAGCTAGCAACA
GGAATGCAGGCTTGCGCAGAAGTTGAAGGTCTACAGTGACACACTTCCTA
CAGGAAAGTTACAGCTCCTAAGCCTCCTCCCAACCAGGGACCCCGTGTGC
AAATACACGAGTTTGTGGAGGACATTTTTATTCGAACAACACCAATTAAT
CAAGAGGCAGAACAGAAAGAGCCACCTGAGTGGTGGGCTGTGTCCCACAG
CTGTGAGCAAAATATCTGTGGGGGACAACTAAATGCAAGAATCATTTATT
TTTATTCCCGGGGGATTCTGTGATGATATGATAACGAATAAGTATATACA
CTCCTATTCCTCTCTTTTTTTTTTTTTTCTCCCTCTCGTTCGTTCTTTCT
CTTTTCTTTCCCTCTTTTCTTTTCCCTTCCCTTCTCTTCCTTTACTTTCT
TCCTTTCTTTCCCTTCTTTTTTCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_j20.g1 MSMg01no468_j20.g1 CHROMAT_FILE:
MSMg01no468_j20.g1 PHD_FILE: MSMg01no468_j20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:54 2005
         (454 letters)



>mm_chr2_30618206_30619059
          Length = 854

 Score =  830 bits (429), Expect = 0.0
 Identities = 448/459 (97%), Gaps = 9/459 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aataaagaagccaaaaaacatacctgcacacctcccagaggctcaaccaaccccaagcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aataaagaagccaaaaaacatacctgcacacctcccagaggctcaaccaaccccaagcac 260

                                                                       
Query: 61  aggcaatgtttggctggaggtagagggtaagggcaaggctgagttcgatagtaaggcctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggcaatgtttggctggaggtagagggtaagggcaaggctgagttcgatagtaaggcctt 320

                                                                       
Query: 121 catggaagaggccaagggcacatggactacttttctgttgctttgataaagcaccatgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 catggaagaggccaagggcacatggactacttttctgttgctttgataaagcaccataac 380

                                                                       
Query: 181 caaggcaacttatagaagaaagggtttatttgggttcacagttccaaggggataggaatt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 caaggcaacttatagaagaaagggtttatttgggttcacagttccaagggaataggaatt 440

                                                                       
Query: 241 cagtgtggca-----tttttcatggcagctagcaacaggaatgcaggcttgcgcagaagt 295
           ||||||||||     |    ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagtgtggcaggacat----catggcagctagcaacaggaatgcaggcttgcgcagaagt 496

                                                                       
Query: 296 tgaaggtctacagtgacacacttcctacaggaaagttacagctcctaagcctcctcccaa 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tgaaggtctacagtgacacacttcctacaggaaagttacagctcctaagcctcctcccaa 556

                                                                       
Query: 356 ccagggaccccgtgtgcaaatacacgagtttgtggaggacatttttattcgaacaacacc 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ccagggaccccgtgtgcaaatacacgagtttgtggaggacatttttattcgaacaacacc 616

                                                  
Query: 416 aattaatcaagaggcagaacagaaagagccacctgagtg 454
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 617 aattaatcaagaggcagaacagaaagagccacctgagtg 655


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space:   374736
Effective search space used:   374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)