BAC Information

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BAC

Clone NameMSMg01-468L23
Chromosome2 (Build37)
Map Location 105,008,413 - 105,210,693
singlet/doubletdoublet
Overlap geneWt1, 0610012H03Rik
Upstream geneD430041D05Rik, LOC100043349, Hipk3, LOC383735, LOC668733, Cstf3, Tcp11l1, EG622282, OTTMUSG00000014964, Depdc7, Qser1, LOC100042995, 2310047K21Rik, LOC668744, Prrg4, Ccdc73, Ga17, 2210415I11Rik, LOC622356
Downstream geneRcn1, Pax6os1, LOC100043391, Pax6, Elp4, LOC100043394, Immp1l, LOC100043402, Dph4, LOC668765, Dcdc5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468L23.T7 (MSMg01no468_l23.b1)MSMg01-468L23.TJ (MSMg01no468_l23.g1)
ACCAG552147AG552148
length801776
length of high quality
(start - end)		462 (52 - 513)419 (80 - 498)
definitionCHROMAT_FILE: MSMg01no468_l23.b1 PHD_FILE: MSMg01no468_l23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:05 2005CHROMAT_FILE: MSMg01no468_l23.g1 PHD_FILE: MSMg01no468_l23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,210,275 - 105,210,693)(105,008,413 - 105,008,831)
sequence
AAAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAAT
CCGCGGAATTCAGATCCCCTTCCCCCACACACAAAAAAGCTGGGGCCATA
ATATCCATTGGTAATCCCAGCTCTGGCGTGGTTAAGACAGGAGGCGCCCT
GGGGCTTGCCGGTCAGTCAGACCAGGCAGATCTGTGAGTGCTAGGTTGAG
ACAAAGACCTTGTCTTAAAAAATATGTCGGAGAGTGAATAAAGGGGACAC
CTGATGTTGGCTGCTGTCCTCCGCATGCATATGCGCACATGCAAATACAC
ATGCATATGCAAATGAGCACATACATATGCACACTTGCAAGTGCCTATCT
GAATCTGCACACCTGTGAACACAGAGACACATAACTAAGAATTGCTGTTG
TTTTTTAAAAGTTCCCACAGTATGCCTTTCTTTAAGCAAGTTCTATGTCC
ATGGAGGTATTTTAAAGAAAAACTTTCTTTAATGTGAAATAGACTAAGAC
CATTTACTTAAAGACATGGTTTCCTGTATATCCCTGGAAGGGCTGGAACT
TGATGTGTAGACCAGGTTAGCCTCCAATTCTTAGGCTGGCCGCCTCTACC
TCTCCAGAGGTGGGGATTCCAGGTATATGACCCCCCGCCGGGCTTTTGTT
TGTCTTGATTGGTGATATATATACTGCTCTTTTGTAGGGTTTCTTTGTCT
CCCCTCTTATCCACTTCCCTTTTTTCCTTTCTTTCCGTGGCTCACTAAAC
ACCTTTGCTCTCCTCTCTCTTACTACTTCCCTGTTCTTTTCTAATTTCTC
T

NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGGAGGTGGAAAAATTTGTA
GAAACTCAGTGCACTCTTGGGGTCTTTTCTCCCAGCATTTGGCTGAACTT
TCCCTGTGGACACAGGGGTGGGGCTCTTCTTTCTGAGTCCAGGGTTGCAC
AATCCTACTGCTGACTCAGTCCAGATTAAAGGACCACAACCTTGCTAAGC
GCTTCAGCTGCTGGCTTAATTGGGGATCTTACAACCATGGAGTCATTTAT
GTTGGGCCTAGGAACAAGAAGTCAGTAGCATAGAACATCAGATCTTCAGG
CCATAAAACACAGAACAGTTCATTCACAAGGCCAGCCTCAAGGCGCCTCT
ATCCAAAATTTTATCTCTGATTCAAACATGGACTTTGAAACAAACTTTTT
TGGCATTTTTTTTTTGGCTTCTCTAAATAGTCCATGCTAACATATGGGAG
ACATTCCATTTCAAACCATAAGACACTTTCCTTAACATTGCCTCAGTGGN
AGGCACCAGCCTATTCCTTTTACTTGGAAAGGTTGGTCTAATCTGTTCCG
GAACCCTTTGATGCTGCCAGGTTATTGGGCCCCATTCCCGAGGGAAATGG
GCCCGGGATCCCTCTTTTTCCTCTTTCTTGTGTTCCGGTCACTTGTGGTA
AGAGGCATTTTCTTTTTTTGTGCGTTCTTTATCCCCTTTTCGGTGCCTCT
TTGTTTTATTGTTTTTTGTAACATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_l23.b1 MSMg01no468_l23.b1 CHROMAT_FILE:
MSMg01no468_l23.b1 PHD_FILE: MSMg01no468_l23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:05 2005
         (462 letters)



>mm_chr2_105209833_105210693
          Length = 861

 Score =  727 bits (376), Expect = 0.0
 Identities = 409/422 (96%), Gaps = 6/422 (1%)
 Strand = Plus / Minus

                                                                       
Query: 44  gccataatatccattggtaatcccagctctggcgtggttaagacaggaggcgccctgggg 103
           ||||||| |||||| || ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 861 gccataaaatccatcggcaatcccagctctggcatggttaagacaggaggcgccctgggg 802

                                                                       
Query: 104 cttgccggtcagtcagaccaggcagatctgtgagtgctaggttgagacaaagaccttgtc 163
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cttgccggtcagtcagaccaggcagatctgtgagtgctaggttgagacaaagaccttgtc 742

                                                                       
Query: 164 t-taaaaaatatgtcggagagtgaataaaggggacacctgatgttggctgctgtcctccg 222
           |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgaaaaaaatatgtcggagagtgaataaaggggacacctgatgttggctgctgtcctccg 682

                                                                       
Query: 223 catgcatatgcgcacatgcaaatacacatgcatatgcaaatgagcacatacatatgcaca 282
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 catgcatatgcgcacatgcaaatacacatgcatatgcaaatgagcacatacatatgcaca 622

                                                                       
Query: 283 cttgcaagtgcctatctgaatctgcacacctgtgaacacagagac--acataactaagaa 340
           |||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||
Sbjct: 621 cttgcaagtgcctatctgaatctgcacacctgtgaacacagagactcacataagtaagaa 562

                                                                       
Query: 341 ttgctgttgttttttaaaagttcccacagtatgcctttctttaagcaagttctatgtcca 400
           |||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttg---ttgttttttaaaagttcccacagtatgcctttctttaagcaagttctatgtcca 505

                                                                       
Query: 401 tggaggtattttaaagaaaaactttctttaatgtgaaatagactaagaccatttacttaa 460
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 504 tggaggtattttaaagaaaaactttctttaatgtgaaatagactaagactatttacttaa 445

             
Query: 461 ag 462
           ||
Sbjct: 444 ag 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 861
Length adjustment: 10
Effective length of query: 452
Effective length of database: 851
Effective search space:   384652
Effective search space used:   384652
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no468_l23.g1 MSMg01no468_l23.g1 CHROMAT_FILE:
MSMg01no468_l23.g1 PHD_FILE: MSMg01no468_l23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:05 2005
         (419 letters)



>mm_chr2_105008213_105009031
          Length = 819

 Score =  772 bits (399), Expect = 0.0
 Identities = 414/419 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   taggaggtggaaaaatttgtagaaactcagtgcactcttggggtcttttctcccagcatt 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 taggaggtggaaacatttgtagaaactcagtgcactcttggggtcttttctcccagcgtt 260

                                                                       
Query: 61  tggctgaactttccctgtggacacaggggtggggctcttctttctgagtccagggttgca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggctgaactttccctgtggacacaggggtggggctcttctttctgagtccagggttgca 320

                                                                       
Query: 121 caatcctactgctgactcagtccagattaaaggaccacaaccttgctaagcgcttcagct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caatcctactgctgactcagtccagattaaaggaccacaaccttgctaagcgcttcagct 380

                                                                       
Query: 181 gctggcttaattggggatcttacaaccatggagtcatttatgttgggcctaggaacaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 gctggcttaattggggatcttacaaccatggagtcatttatgttgggcccaggaacaaga 440

                                                                       
Query: 241 agtcagtagcatagaacatcagatcttcaggccataaaacacagaacagttcattcacaa 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtcagtagcagagaacatcagatcttcaggccataaaacacagaacagttcattcacaa 500

                                                                       
Query: 301 ggccagcctcaaggcgcctctatccaaaattttatctctgattcaaacatggactttgaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggccagcctcaaggcgcctctatccaaaattttatctctgattcaaacatggactttgaa 560

                                                                      
Query: 361 acaaacttttttggcattttttttttggcttctctaaatagtccatgctaacatatggg 419
           |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acaaacttttttggcaatttttttttggcttctctaaatagtccatgctaacatatggg 619


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space:   332100
Effective search space used:   332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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