BAC Information

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BAC

Clone NameMSMg01-468M22
Chromosome2 (Build37)
Map Location 124,203,890 - 124,204,266
singlet/doubletsinglet
Overlap genenone
Upstream gene4930517E11Rik, LOC100043360
Downstream geneSema6d, LOC100043367, LOC100043369, Slc24a5, Myef2, LOC100043375, Slc12a1, Dut, A530010F05Rik, LOC100043698, Fbn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468M22.T7 (MSMg01no468_m22.b1)MSMg01-468M22.TJ (MSMg01no468_m22.g1)
ACCAG552193AG552194
length799785
length of high quality
(start - end)
404 (52 - 455)377 (79 - 455)
definitionCHROMAT_FILE: MSMg01no468_m22.b1 PHD_FILE: MSMg01no468_m22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:10 2005CHROMAT_FILE: MSMg01no468_m22.g1 PHD_FILE: MSMg01no468_m22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAGAATTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAAT
CCGCGGAATTCTCTATTTATATCCGTACCCTATTTTTAAACTTGCATATT
TGTTTTCTTGGTATTTCGTTCTTTATATGACTGAGGTATTAGTCTCTATC
ATATGTGGAGTTTATAAAGTTCTTTTTATTCAACAGTCTCTTTATCATTC
AGAAGCTTATCAGTTTCATGAGAACACATTTATTAATTGTTGATCTTAGT
GCCTGTGCTAACAGCATTCTGTTTAGAAAGTCTTCCTGTGCCAATGAGTT
CAAGGCTACCTCTCAATTTCCCTTCTATCATTTTTAGTGTACCTAAAACT
GGTTTCATGTTGAGGTCTTTGATCCATTTGGAATTGAGTTTTGTGCAGGT
GCTAAAGATGGATCTATTTGGATTCTGCTACTTGCAGAAAAAGTTTGACC
AGCACCATTTGTTGAAGATGCTATAATGGTTTTAATAAAAAAACAGGTGT
GTTGGATTTATGAACGGGTCTTTAATTTTTATTCCCATTGATTTGCATGC
CTGGGTTTTATTGCATCAAAAAAATTGGTTTTTTTATCCACACACCCGTG
TTCATAACCTTGGAACCATGGATGGGGGAATCCCGAGGTTCTTCTATTTC
TCCTATTTTTTTTTTTTAATTGTCTCTTTTTATATTCTATTATCCTCTTT
TTATTATACTTATATTCTCTCACTCTTTTCCTTATACTTCCTCTTTTTCC
TCTCTTATTTTTTTTTCTCCTTCTCCTTTTTATATTCCTTTTTATTTTG
NTTTCCGATGCTANTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCACACACAAACTCTCTGTAGCT
GGCAAAATTCCCACCCCTTGTAAAGCATGGGACAATCATAGTTAGTGGAT
ATGGTTAGTGGATATGGAAGCAGCCCCATGTCCCACACTTGGGATTAAAA
CAAAAATATATTCATCTAACATAACTGGGGTTTTAAAGAAACCAAAATTC
TTACTACAAACTTTAGCTTACTTTCTCATAAGGAATTTACACTTACACTA
ACATAAATAACTACATTTACTTTATTGATTGTTATATCCCAAACACCCAA
TAAAAATGTCCCATAAAGAATAACTTCTCTCTGAATACTTACAGAAGGTT
TTGAATGGTTGTGAATCCCAGNATTTACACCCTCCCTAACCAATGCACAG
CTAGTTAGCTACATTCCTAGGGAATCTACTTACCCTGGGTTTTACTTTTC
CCCTCCTTAATTCTTTACAACCTTCTATTAAAAGTTTCTATTAACTTAAT
TTTTTGTTTTCACAAACTTCTAATACCCCCCCTTTTTTCACCCCTGTCTC
CCGTATTCTTTTATCCTTTCTCCCATTAAATTCTAACCCTAAATTCCTGT
TATTTTTATTCTTTACCTTCATTATATTTTTATCGGTCCAGAACCTTATT
ATTTTTCCTATTCGTCTCCCTATCTTTTTTCAACCCTTACCTTCCCTCTC
CTCTTCTATTTCCCGCCCCCCAACTCCTCCCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_m22.g1 MSMg01no468_m22.g1 CHROMAT_FILE:
MSMg01no468_m22.g1 PHD_FILE: MSMg01no468_m22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:10 2005
         (377 letters)



>mm_chr2_124203518_124204294
          Length = 777

 Score =  708 bits (366), Expect = 0.0
 Identities = 374/377 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacacacaaactctctgtagctggcaaaattcccaccccttgtaaagcatgggacaatca 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 749 cacacacaaactctctgtagctggcaaaattcccaccccttgtaaagcttgggacaatca 690

                                                                       
Query: 61  tagttagtggatatggttagtggatatggaagcagccccatgtcccacacttgggattaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 tagttagtggatatggttagtggatatggaagcagccccatgtcccacacttgggattaa 630

                                                                       
Query: 121 aacaaaaatatattcatctaacataactggggttttaaagaaaccaaaattcttactaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 aacaaaaatatattcatctaacataactggggttttaaagaaaccaaaattcttactaca 570

                                                                       
Query: 181 aactttagcttactttctcataaggaatttacacttacactaacataaataactacattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 aactttagcttactttctcataaggaatttacacttacactaacataaataactacattt 510

                                                                       
Query: 241 actttattgattgttatatcccaaacacccaataaaaatgtcccataaagaataacttct 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 actttattgattgatatatcccaaacacccaataaaaatgtcccataaagaataacttct 450

                                                                       
Query: 301 ctctgaatacttacagaaggttttgaatggttgtgaatcccagnatttacaccctcccta 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 449 ctctgaatacttacagaaggttttgaatggttgtgaatcccagtatttacaccctcccta 390

                            
Query: 361 accaatgcacagctagt 377
           |||||||||||||||||
Sbjct: 389 accaatgcacagctagt 373


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space:   282624
Effective search space used:   282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)