BAC Information

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BAC

Clone NameMSMg01-468P23
Chromosome2 (Build37)
Map Location 138,603,110 - 138,603,569
singlet/doubletsinglet
Overlap genenone
Upstream geneBtbd3
Downstream geneLOC628103, C130053K05Rik, LOC100043792, 5430433G21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468P23.T7 (MSMg01no468_p23.b1)MSMg01-468P23.TJ (MSMg01no468_p23.g1)
ACCAG552338AG552339
length790782
length of high quality
(start - end)
461 (80 - 540)245 (81 - 325)
definitionCHROMAT_FILE: MSMg01no468_p23.b1 PHD_FILE: MSMg01no468_p23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:25 2005CHROMAT_FILE: MSMg01no468_p23.g1 PHD_FILE: MSMg01no468_p23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCATGTCCCATTTCATTAATAGACGGTGAATTCAAGAGAGAC
ATGTACAAGAATGAGGAAAACAGGTAAGCAAAGCTCCTTATTGCAAATTG
GTGAAGATGTTTCCTAGGTTTTAAGCATTGCATCAGTCTTGGTCCATCGG
CTCCTATCATCCAAGCACTTAGCTGCTGTAGTGCTGGGGATGAGCAGTCT
CTATATGATTGTTTTACTGGCTCGTTAGAAATGTAGGAAATGACCAATTT
TAAGTTATATTTTCAGTCAACAATATAGTTGTGTATCTTGATAATCACAA
CAAGGTTTCTGCAAATCGATGTTTACTCAATACATGTCACAAGGTCCATG
CGATCTTATTCTTCATTTATTTATGACATTCATAATGAAGGAAAAATAAA
AAAGTGAGAGCGCTGTCGATATCTTCAGCAGGGAATTAATAATTTTATTT
GAAATCCAGGTACCATGCTCTCCTTTCCCAGTCCCAGCTTCCCAGAGCCG
ATTTGCATAAAATCTGCTTTTCTATACTATATTTTCATGTGCTTGGTTGT
CTTTCTTTTTGTTACGAAACACAATTCTATTTGTACTTTGGTTATTGTTT
TTGTAAGGTTTTATTTTTTTTCTTATTTATTTTTTTTTTTTTTTGGTCTT
TATAACTTTTTTTTTCTCATTTTTTCTTCTCGGTTTTTATTTCTCTTCTT
CTCTTCTTTTTTTTTTATCACTTCTTATTCTTCTTGTTTG
NAAAAAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAGAACTTTT
ATCATGAATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCCAACGA
GATGATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAGTGGATTACAT
TGATGGATTTTCGTATATTAAACCATCCCTGCATTCCTGGAATAAAACCT
ACTTGGTCAGGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGC
GAGAATTTTATTGAGGATTTTTGCATCTTTTTTCTTAAGAGAAATTGGCC
TGAAGTTCTCTATCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTA
ATACTGCCTTCTTAAAATGAGTCGCCCTAGAGTATTTTCTACTTCTATCT
TGCGAAAAATTTTGTGTATAACTGGAATTAAATCTTCTTTTATCTTTTGA
TTCACCTCTGTTCTTATCACGTTCTGTTTTTGTCATTTTTTTTATCGTAT
ATTACATCTTATATATTCCTTCCTATTCTCCCCATATCTCCTATTACCTC
TTCTTCTCTATTTTTTCCTCTTTCTCTTTTTAATCTTCATGCTCCTTTTT
TTTCTCTTTCTTTCCTTCTCTTCACTATTCTTCTTCACTTTCTTCCTTTT
CCTCTATATCCTATAATCTACTCTTTTCATACTTTTTTATTATCTCTTCT
TTTTCTCTTCTTATATTACTTTGTTATCTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_p23.b1 MSMg01no468_p23.b1 CHROMAT_FILE:
MSMg01no468_p23.b1 PHD_FILE: MSMg01no468_p23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:25 2005
         (461 letters)



>mm_chr2_138602910_138603770
          Length = 861

 Score =  859 bits (444), Expect = 0.0
 Identities = 456/460 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gacggtgaattcaagagagacatgtacaagaatgaggaaaacaggtaagcaaagctcctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 gacggtgaattcaagagagacatgtacaagaatgaggaaaacaggtaagcaaagctcctt 601

                                                                       
Query: 61  attgcaaattggtgaagatgtttcctaggttttaagcattgcatcagtcttggtccatcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 attgcaaattggtgaagatgtttcctaggttttaagcattgcatcagtcttggtccatcg 541

                                                                       
Query: 121 gctcctatcatccaagcacttagctgctgtagtgctggggatgagcagtctctatatgat 180
           ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 540 gctcctatcatccaaccacttacctgctgtagtgctggggatgagcagtctctatatgat 481

                                                                       
Query: 181 tgttttactggctcgttagaaatgtaggaaatgaccaattttaagttatattttcagtca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tgttttactggctcgttagaaatgtaggaaatgaccaattttaagttatattttcagtca 421

                                                                       
Query: 241 acaatatagttgtgtatcttgataatcacaacaaggtttctgcaaatcgatgtttactca 300
           |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 acaatatagttgggtatcatgataatcacaacaaggtttctgcaaatcgatgtttactca 361

                                                                       
Query: 301 atacatgtcacaaggtccatgcgatcttattcttcatttatttatgacattcataatgaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 atacatgtcacaaggtccatgcgatcttattcttcatttatttatgacattcataatgaa 301

                                                                       
Query: 361 ggaaaaataaaaaagtgagagcgctgtcgatatcttcagcagggaattaataattttatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ggaaaaataaaaaagtgagagcgctgtcgatatcttcagcagggaattaataattttatt 241

                                                   
Query: 421 tgaaatccaggtaccatgctctcctttcccagtcccagct 460
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 tgaaatccaggtaccatgctctcctttcccagtcccagct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space:   383801
Effective search space used:   383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)