Query= MSMg01no469_b10.b1 MSMg01no469_b10.b1 CHROMAT_FILE:
MSMg01no469_b10.b1 PHD_FILE: MSMg01no469_b10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:32 2005
(563 letters)
>mm_chr2_140814357_140815321
Length = 965
Score = 1050 bits (543), Expect = 0.0
Identities = 559/565 (98%), Gaps = 2/565 (0%)
Strand = Plus / Plus
Query: 1 gagagaatagaccaccttggtcatgtagctatgtgcagtttcttaccttcttactcagct 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gagagaatagaccaccttggccatgtagctatgtgcagtttcttaccttcttactcagct 260
Query: 61 aatctcttatagtgtgtactggggataaaaataaacaacgtagtacccttatttg--ttt 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 aatctcttatagtgtgtactggggataaaaataaacaacgtagtacccttatttgttttt 320
Query: 119 tttttgtaacaattaagtatgcaaacaaatatcaagttctctagtaaacaataagaagag 178
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttttgtaagaattaagtatgcaaacaaatatcaagttctctagtaaacaataagaagag 380
Query: 179 gcattgttgtgggcatatttatttcaaagttcacattttgatacaagacccctgagcaac 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcattgttgtgggcatatttatttcaaagttcacattttgatacaagacccctgagcaac 440
Query: 239 atatctttaatagtattcatagtgttgaattaatgacaacttgactgattctgaagagtt 298
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atatctttaatagcattcatagtgttgaattaatgacaacttgactgattctgaagagtt 500
Query: 299 agtaaatgtagcatttgtactgaagcagagtctaaggtagctctcgtggataagcttaaa 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtaaatgtagcatttgtactgaagcagagtctaaggtagctctcgtggataagcttaaa 560
Query: 359 attgtatttagtagagttaatctcttaaagaaaataacagaccagtaagatctaagcatt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attgtatttagtagagttaatctcttaaagaaaataacagaccagtaagatctaagcatt 620
Query: 419 ttatgcttgaaatgactgtttattcattgtttgtccagaatatgtcctgaaatgtttatt 478
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttatgctggaaatgactgtttattcattgtttgtccagaatatgtcctgaaatgtttatt 680
Query: 479 tttttcagttattctagaaggttttgatagggctaattcctatggttatgaatattctgc 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttttcagttattctagaaggttttgatagggctaattcctatggttatgaatattctgc 740
Query: 539 tacccaatactcctctatgacccat 563
|||||||||||||||||||||||||
Sbjct: 741 tacccaatactcctctatgacccat 765
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 965
Length adjustment: 10
Effective length of query: 553
Effective length of database: 955
Effective search space: 528115
Effective search space used: 528115
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no469_b10.g1 MSMg01no469_b10.g1 CHROMAT_FILE:
MSMg01no469_b10.g1 PHD_FILE: MSMg01no469_b10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:32 2005
(477 letters)
>mm_chr2_140945343_140946219
Length = 877
Score = 843 bits (436), Expect = 0.0
Identities = 464/474 (97%), Gaps = 2/474 (0%)
Strand = Plus / Minus
Query: 1 caacctacccttatgatctgtttttctgtgaatattgctgccttaataaacctttggggc 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 472 caacctacccttatgatctgtttttctgtgaatattgctgccttaataaacctttgggac 413
Query: 61 atccttccatttcacactgaagcaggtggtatgagggatgaggtatatatttcatgtaga 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 ctccttccatttcacactgaagcaggtggtatgagggatgaggtatatatttcatgtaga 353
Query: 121 ctaataaagttgccagctaggttaagctctggtcaccaaggtttgtaaatttctagtaaa 180
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 352 ctaataaagttgccagctaggttaagctctggtcgccagggtttgtaaatttctagtaaa 293
Query: 181 ttgtttgaaaattgacttcctttccttctccacctcatcttttttctcctgactgagaac 240
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 292 ttgtttgaaaattgacttcctttccttctccacctcatctttttactcctgattgagaac 233
Query: 241 agctccctcacacactatctagcctcaaatccaaaaaagaaaaaaaaaaaagaagaagaa 300
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 232 agctccctcacacactatctagcctcaaatccaaaaaag--aaaaaaaaaagaagaagaa 175
Query: 301 aacccctcagtctattattagagaatcacaactgaagtcagcgagatgaggtgatgacaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 aacccctcagtctattattagagaatcacaactgaagtcagcgagatgaggtgatgacaa 115
Query: 361 ggtggtaagacacatgtgtagggctacatgaggaggaagtcactgggatggtgctatcac 420
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 114 ggtggtaagacacatgtgcagggctacatgaggaggaagtcactgggatggtgctgtcac 55
Query: 421 cttgaatcttcagcactttctttgaaaatcatgatccatgtgaagagagagaaa 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54 cttgaatcttcagcactttctttgaaaatcatgatccatgtgaagagagagaaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space: 404889
Effective search space used: 404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
