Query= MSMg01no469_o04.b1 MSMg01no469_o04.b1 CHROMAT_FILE:
MSMg01no469_o04.b1 PHD_FILE: MSMg01no469_o04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:37 2005
(566 letters)
>mm_chr2_123702442_123703408
Length = 967
Score = 1065 bits (551), Expect = 0.0
Identities = 563/567 (99%), Gaps = 1/567 (0%)
Strand = Plus / Plus
Query: 1 ttgatacctagaagctctagagttacccatatggaaaatttgtattatgcttaacttctt 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 ttgatacctagaagctctagagttacccatatggaaaatttgtattatgcctaacttctt 260
Query: 61 tatgtacttcttgaatccatttgtgttgtgatttgtattgatatttagttgtgatatgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatgtacttcttgaatccatttgtgttgtgatttgtattgatatttagttgtgatatgaa 320
Query: 121 tattccatgatttgattataagatattttatttttcctatttatgactattatgaaaacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattccatgatttgattataagatattttatttttcctatttatgactattatgaaaacc 380
Query: 181 ggatacaagatatcattgggttggtgtaatagtaaaatgtttaatacatttcatgtatat 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agatacaagatatcattgggttggtgtaatagtaaaatgtttaatacatttcatgtatat 440
Query: 241 aaattagagtgggatttttaagtcacaacaacaa-aaaaaactagcagcatagaaatact 299
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 aaattagagtgggatttttaagtcacaacaacaacaaaaaactagcagcatagaaatact 500
Query: 300 ttttatcttgattaagagttgatgaaaagagtatgtaaaaatttttacatctcatccaac 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttttatcttgattaagagttgatgaaaagagtatgtaaaaatttttacatctcatccaac 560
Query: 360 tatacgtaaaatctgaacactttactaatgtgaccaaacctttaagcaatatagtaaagg 419
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtacgtaaaatctgaacactttactaatgtgaccaaacctttaagcaatatagtaaagg 620
Query: 420 ggatgtgctttccactgctttactcacacacgaagtagtttattcatgatatgaattttt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggatgtgctttccactgctttactcacacacgaagtagtttattcatgatatgaattttt 680
Query: 480 aagcacaagctatcagttgcatttatatagtattttatgttttttagaatttttatgatc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aagcacaagctatcagttgcatttatatagtattttatgttttttagaatttttatgatc 740
Query: 540 atgggttttagtaggtttattttctac 566
|||||||||||||||||||||||||||
Sbjct: 741 atgggttttagtaggtttattttctac 767
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 967
Length adjustment: 10
Effective length of query: 556
Effective length of database: 957
Effective search space: 532092
Effective search space used: 532092
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no469_o04.g1 MSMg01no469_o04.g1 CHROMAT_FILE:
MSMg01no469_o04.g1 PHD_FILE: MSMg01no469_o04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:37 2005
(244 letters)
>mm_chr2_123889996_123890639
Length = 644
Score = 456 bits (236), Expect = e-133
Identities = 242/244 (99%)
Strand = Plus / Minus
Query: 1 cagggaagacagaagagcaggaagctctgcggtcagcatttatatgactctggtgctgta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cagggaagacagaagagcaggaagctctgcggtcagcatttatatgactctggtgctgta 385
Query: 61 aagataatgagagctgtaatggaatgtgtatgtcaggagaacggatcattaagatgttat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aagataatgagagctgtaatggaatgtgtatgtcaggagaacggatcattaagatgttat 325
Query: 121 tacctttatttgtgggttttgtgtttccactctggtagattctgctatgtgtttcactgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tacctttatttgtgggttttgtgtttccactctggtagattctgctatgtgtttcactgg 265
Query: 181 gctgatgtatctatagtatcaatgaaattccaaggctcagattatggtgaaagcagcagt 240
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 264 gctgatgtatctatagtatcagtgaaattccaaggctcagattatggtgaaagcaacagt 205
Query: 241 taaa 244
||||
Sbjct: 204 taaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
