TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATTATCGTGTTCCCTTTTTCATGTTGTTCTGATTTCAGAAACCCCCAC
AGTTTGATTGTCAGCTGATGGACTCGGGGAGAGATAGATGACTGTATCAT
GAGGTCTAGTCAGTGATCTGCTTATGGATTAATAATTTAGTGGTATTACT
CAGGAGTGGATGGAAGCAGGAGATAGAGTCTAGCTAAAGAAACTGTGCCA
CTGGTGGTGTAATTGGGAGGATAGTTCTCACTTCTTCCCCTTTCTTGTCC
TAGCCTGCCTCATAGCTCCATGACTTGCACAGCTGTCCTCTGTCAGAGGA
TTTTTCTGCTCTCCCGTTCTGCTTTACCACAGGCTGCAGAAAGCCAGAAA
ACCTTGGAATGAAACTTCTGAAACCTTGATCCAAAACAAATCTTTCCTCT
TGTAAAGATTTTTTTTTAAAGCTGTTTGTCACAGTCATGGGATGCTAGTG
AACATTATAATCTTATTTTAACCAGCTACAGCTGAATCTTTAANAAATGT
AGCTGAATAAGAAGCACGATTATAACATATTAATGGGTCTTATTTTTATC
CAAAGGCATAAAAGTGTTATGCACCCTTATTTTTCTCTCAAGGGATAAAA
GTGTTATGCAGGGTGCCAATCCGGGGTTGGAAACTTGATGCGTCCCCATG
GAATTTTGCCATTCAGCCCCACTCCTCTCTTTGAGAGTTGAACCCGCCCC
TCCCCCCCCCCCTTACTCTTTTTTG

GAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGC
ACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAA
ACAACCCTAAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCAAAAA
TTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCC
TCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCCGTC
TGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAAT
ACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACA
CATGCTCCACTATGTTCATAGCAGCATTATTTATAATAGCCAGAAGCTGG
AAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTA
CATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGA
AATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTA
ACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATA
TTAGCCCAAAACCTATGATACCCCAGATATCAGATACCATTTTCCTAAAC
ACTTGAAACTCAAGAAAAATAGAAGACTGTAGGTGTGGACCCTATGCCCC
TTCCCTATAAATGGGGACAAN

Query= MSMg01no470_b22.b1 MSMg01no470_b22.b1 CHROMAT_FILE:
MSMg01no470_b22.b1 PHD_FILE: MSMg01no470_b22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:55 2005
         (538 letters)



>mm_chr2_78017548_78018484
          Length = 937

 Score =  996 bits (515), Expect = 0.0
 Identities = 529/534 (99%), Gaps = 1/534 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattatcgtgttccctttttcatgttgttctgatttcagaaacccccacagtttg 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattatcgtgatccctttttcatgttgttctgatttcagaaacccccacagtttg 264

                                                                       
Query: 65  attgtcagctgatggactcggggagagatagatgactgtatcatgaggtctagtcagtga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attgtcagctgatggactcggggagagatagatgactgtatcatgaggtctagtcagtga 324

                                                                       
Query: 125 tctgcttatggattaataatttagtggtattactcaggagtggatggaagcaggagatag 184
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tctgctcatggattaataatttagtggtattactcaggagtggatggaagcaggagatag 384

                                                                       
Query: 185 agtctagctaaagaaactgtgccactggtggtgtaattgggaggatagttctcacttctt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agtctagctaaagaaactgtgccactggtggtgtaattgggaggatagttctcacttctt 444

                                                                       
Query: 245 cccctttcttgtcctagcctgcctcatagctccatgacttgcacagctgtcctctgtcag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cccctttcttgtcctagcctgcctcatagctccatgacttgcacagctgtcctctgtcag 504

                                                                       
Query: 305 aggatttttctgctctcccgttctgctttaccacaggctgcagaaagccagaaaaccttg 364
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aggatttttctgctctcccattctgctttaccacaggctgcagaaagccagaaaaccttg 564

                                                                       
Query: 365 gaatgaaacttctgaaaccttgatccaaaacaaatctttcctcttgtaaagatttttttt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gaatgaaacttctgaaaccttgatccaaaacaaatctttcctcttgtaaagatttttttt 624

                                                                       
Query: 425 taaagctgtttgtcacagtcatgggatgctagtgaacattataatcttattttaaccagc 484
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 -aaagctgtttgtcacagtcatgggatgctagtgaacattataatcttattttaaccagc 683

                                                                 
Query: 485 tacagctgaatctttaanaaatgtagctgaataagaagcacgattataacatat 538
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 684 tacagctgaatctttaaaaaatgtagctgaataagaagcacgattataacatat 737


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 937
Length adjustment: 10
Effective length of query: 528
Effective length of database: 927
Effective search space:   489456
Effective search space used:   489456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)