BAC Information

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BAC

Clone NameMSMg01-470E04
Chromosome2 (Build37)
Map Location 81,883,594 - 81,884,015
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040704
Downstream geneZfp804a, LOC100041308, A130030D18Rik, EG624362, LOC433550, LOC269292, LOC433440, Fsip2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470E04.T7 (MSMg01no470_e04.b1)MSMg01-470E04.TJ (MSMg01no470_e04.g1)
ACCAG553304AG553305
length743756
length of high quality
(start - end)
370 (76 - 445)423 (81 - 503)
definitionCHROMAT_FILE: MSMg01no470_e04.b1 PHD_FILE: MSMg01no470_e04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:06 2005CHROMAT_FILE: MSMg01no470_e04.g1 PHD_FILE: MSMg01no470_e04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCTTAATTTACTTAGATTTGACCTTAGTACAAGGAGATAG
AAATGGATCAATTCACATTCTTCTACATGATAACTGCCAGTTGTGCCAGC
ACCGTTTGTTGAAAATGCTGTCTTTTTTCCACTGGATGGTTTTAGCTCAC
TTGTCAAAGATCAAGTGACCATAGGTGTGTGGATTCATCTCTGGGTCTTC
AATTCTGTTCCATTGGTCTACTTGTCTGTCACTATACCAGTACCATGCAG
TTTTGATCACAATTGCTATGTACTACAGTTTTAGGTCCTGCATGGTGATT
CCACCAGAGGTTCTTTTATCCTTGAGAAGAGTTTTTGCTATCCTCGGTTT
TTTGTTATTCCAGATGAATCTGCCGATTGCCCTTTCTAATTCGTTGACGA
ATTGAGCTGTAATTTTGATGGGGATCACCTTGAATCTGTACATTGCTTTT
GGCAAGATGGCCATTTTTACTATGTTGATCCTGCCATTCCCATGACATGG
CAGACCTTTCCCTCTCCTGACACCTCCTTTAACTTCCTTTCTTCACAGAC
TTGCACTTTCTTACCATTTATATTTTTCCCCTTCTTTACCTATACTTTCA
CTCCACCCCACTTTTATATTAATTTTGTACTACCCGGAACCCCCCCCTCT
CTTCCCCTCATTCTTCTTCCCCCCCCCTTTTTTCCCCTTCCCC
TTCCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTCCGAAAAATTCAACAGCAGCAATTAGACT
ATATGTAAAGGATTCATCCTTTAGGATGAAATGGCATTATATAGAAGGCA
TTTTCTCATTTGACCTTTCAATGCAATATTAAACTGTCATGAATATCTAA
ATCATTAATAAATGACCAAATTATATTTGTGTGTCATGGTGAAAGAATGA
TGCTTAGCCTTGACAGAAAAATTATATGTAAGAAATACATGTTTTCCTTT
CAAGAAAACTTTTTCTATACTTTGTGTATTTTTGAAAGAGAAAATGAAGA
ATTCATATTTTGTAAAGTTTTGGTAGTTATACAACTGTAGACTTTTTTTT
TCATTTTGAAAATTCCCCAAATACCATCTTAGAGTGCTGAATGAATATTT
TGCATATACCTCACAGGGCACACAGACATACCTAGATAAAAATTATTTAA
AGTCAGAATAGACAAACCCAACTACCCATGAAGGAAACAGGTACTTACAA
ACAAACCTTTTCACTGATACATTCTACCTTCAACTTTTGTACTGACCCTC
TACCACTTTTTGAAACATTAAGCTCGCGTGTGCATATTGTATTTCCCCCG
AAATTTTTTTAACATTGATTCCTTTAAAATTACTTTAAGCCTATTCCGCT
TTTCCAAACGCATTTCTTCCCATAACGTCCCCATTTCTTGGTAACCTTCT
CTTGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_e04.g1 MSMg01no470_e04.g1 CHROMAT_FILE:
MSMg01no470_e04.g1 PHD_FILE: MSMg01no470_e04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:07 2005
         (423 letters)



>mm_chr2_81883394_81884215
          Length = 822

 Score =  772 bits (399), Expect = 0.0
 Identities = 417/423 (98%), Gaps = 1/423 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaacagcagcaattagactatatgtaaaggattcatcctttaggatgaaatggcattat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcaacagcagcaattagactatatgtaaaggattcatcctttaggatgaaatggcattat 260

                                                                       
Query: 61  atagaaggcattttctcatttgacctttcaatgcaatattaaactgtcatgaatatctaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atagaaggcattttctcatttgacctttcaatgcaatattaaactgtcatgaatatctaa 320

                                                                       
Query: 121 atcattaataaatgaccaaattatatttgtgtgtcatggtgaaagaatgatgcttagcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcattaataaatgaccaaattatatttgtgtgtcatggtgaaagaatgatgcttagcct 380

                                                                       
Query: 181 tgacagaaaaattatatgtaagaaatacatgttttcctttcaagaaaactttttctatac 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 tgacagaaaaattatatgtaagaaatatatgttttcctttcaagaaaactttttctatac 440

                                                                       
Query: 241 tttgtgtatttttgaaagagaaaatgaagaattcatattttgtaaagttttggtagttat 300
           ||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttgtgtagcattgaaagagaaaatgaagaattcatattttgtaaagttttggtagttat 500

                                                                       
Query: 301 acaactgtagactttttttttcattttgaaaattccccaaataccatcttagagtgctga 360
           |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 501 acaactgtagactttttttt-cattttgaaaattccccgaataccatcttagagtgctga 559

                                                                       
Query: 361 atgaatattttgcatatacctcacagggcacacagacatacctagataaaaattatttaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 atgaatattttgcatatacctcacagggcacacagacatacctagataaaaattatttaa 619

              
Query: 421 agt 423
           |||
Sbjct: 620 agt 622


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 822
Length adjustment: 9
Effective length of query: 414
Effective length of database: 813
Effective search space:   336582
Effective search space used:   336582
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)