BAC Information

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BAC

Clone NameMSMg01-470E05
Chromosome2 (Build37)
Map Location 125,383,585 - 125,570,237
singlet/doubletdoublet
Overlap geneCep152, Shc4, Eid1, 3110001I20Rik
Upstream geneSema6d, LOC100043367, LOC100043369, Slc24a5, Myef2, LOC100043375, Slc12a1, Dut, A530010F05Rik, LOC100043698, Fbn1
Downstream geneCops2, Galk2, Fgf7, Dtwd1, Atp8b4, Slc27a2, Hdc, Gabpb1, Usp8, LOC100043714
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470E05.T7 (MSMg01no470_e05.b1)MSMg01-470E05.TJ (MSMg01no470_e05.g1)
ACCAG553306AG553307
length764780
length of high quality
(start - end)
246 (73 - 318)249 (75 - 323)
definitionCHROMAT_FILE: MSMg01no470_e05.b1 PHD_FILE: MSMg01no470_e05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:07 2005CHROMAT_FILE: MSMg01no470_e05.g1 PHD_FILE: MSMg01no470_e05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,569,995 - 125,570,237)(125,383,585 - 125,383,830)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAACATCCGCGGAA
TTCCTCAGTGTTGTCCACCATCAGATTTAATGTCTACTTTAAAAGCTAGT
GTTGTTAATTTGTTGTTGTTTGTTTTGTTTTTAAAACAATAAACAAAAGG
CCCAACCAACCCCTCTGCAGCTTCTAAGCTACTGTAATGTGGCTGCTCCT
GTCTCTCCCGTACAGTCAAGCACGAGCCACTGTAATGTGGCTGCTGCTGT
CTCTCTCTCCCGTACAGTCAAGCTCGAGTGTTTGCCAAAGAGCTGGTGTT
CCTCTTCTCTCTGTATTTTTTTACTAAAGGGGAGCACATTTGTTGAACCT
TTCAAATATATCACAAATAGTTAGAATCAGTTGCCTCAACGCTGTGAGGT
TTATGGCCCTCATGTGCGCTGAGTCCATCTTGTAAGGTTCTGTGGTTCAT
ATACTGCCCACATTTCATCTGGACTAAAAATGTAAGAAGCTTAATAACGA
AAAAACCATTGACTAGTCCCAGAACACTCTGTCTTTTTAGAGCCTGCCCA
ACACATTAACCCAGTTCACCTAGGAACCCCCCACCGCTTATATATACCTT
TCTTGTCTCCCTCCCTCCCTATTCTCTCTAACCATATTTTTTATCCACTT
TTAACACTCCTCCTTCCNCATAAGACACCCTTCTCTTCACCCCCTCTTCC
TTTAATCCCCCTCTTCCTTTTCCCCCCCCCTATCCCTTTAACCCCTCTTC
CCTTCCCCATCCCC
ACTATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTTCAGAGACATCAGAACGAAGGCTGGGAGAAGGGCTGGA
GGTAGTAGGACAGCGAGATAAAGGCAGAGTGGGGACAGGAACGAGAGGCA
GAAAGAGGCTGAAGGGTAGTCTAACGAGAACACCTATGCTCCCCTTTGTC
GGCCTTCACCAGTGAGTCTGGAAGGCTGTCCACACTTAGTGTATGAATCA
TGTGTGTATGCAAATAGCTTTATGAGTAAGTATACACATAGACAGTTGAT
CTCTTAATCCAGTTTTCACTTTTTCTGGGTTGNCTTTTTTGAGATATAGC
CCCATTTGTCCTGAAACTCACTTTGTAGACCAGGTTGGTTTTGAACTTCC
AAAGATCCATCTGACTCCACCTCTCTAGTGTTGGGATTAAAGGCATGTGT
CATACTTCTGGTTTTTCTAAGACCCACTATTGCGACCTGTCACCCCTATG
GCGCCTTTAATGTGCCTGAGCCTTGACCTGCCCTTCAAACGCCCCCCCTT
ATTTCTCAATATTTCCCTACTTCCGCGCCCCCGTGTACTCCGCCCTACTA
CCGTTGTTCCCCGATTGCCCTTCCTTCTGTCGTACTACGCCCCATTCTTC
CTGCCTCGCCCCTCGCTCAACCTGGTTCTCTGTCTCCCTCCCCCTGCCCC
GCTTCTTCCCCCCACCCTGTTGTACTCTGCCCCTTTCTTTTTTCCTTCCT
CCTCTTGTCTTTCTTCTCCCCTTCTTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_e05.b1 MSMg01no470_e05.b1 CHROMAT_FILE:
MSMg01no470_e05.b1 PHD_FILE: MSMg01no470_e05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:07 2005
         (246 letters)



>mm_chr2_125569795_125570440
          Length = 646

 Score =  462 bits (239), Expect = e-135
 Identities = 242/243 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agatttaatgtctactttaaaagctagtgttgttaatttgttgttgtttgttttgttttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 agatttaatgtctactttaaaagctagtgttgttaatttgttgttgtttgttttgttttt 384

                                                                       
Query: 61  aaaacaataaacaaaaggcccaaccaacccctctgcagcttctaagctactgtaatgtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aaaacaataaacaaaaggcccaaccaacccctctgcagcttctaagctactgtaatgtgg 324

                                                                       
Query: 121 ctgctcctgtctctcccgtacagtcaagcacgagccactgtaatgtggctgctgctgtct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ctgctcctgtctctcccgtacagtcaagcacgagccactgtaatgtggctgctgctgtct 264

                                                                       
Query: 181 ctctctcccgtacagtcaagctcgagtgtttgccaaagagctggtgttcctcttctctct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 263 ctctctcccgtacagtcaagctcgagtgtttgccaaagagctggtgttccttttctctct 204

              
Query: 241 gta 243
           |||
Sbjct: 203 gta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no470_e05.g1 MSMg01no470_e05.g1 CHROMAT_FILE:
MSMg01no470_e05.g1 PHD_FILE: MSMg01no470_e05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:07 2005
         (249 letters)



>mm_chr2_125383385_125384033
          Length = 649

 Score =  453 bits (234), Expect = e-132
 Identities = 243/246 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaacgaaggctgggagaagggctggaggtagtaggacagcgagataaaggcagagtgggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaacgaaggctgggagaagggctggaggtagtaggacagcgagataaaggcagagtgggg 260

                                                                       
Query: 61  acaggaacgagaggcagaaagaggctgaagggtagtctaacgagaacacctatgctcccc 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 acaggaacgagaggcagaaagaggctgaagggtagtctaacaagaacacctatgctcccc 320

                                                                       
Query: 121 tttgtcggccttcaccagtgagtctggaaggctgtccacacttagtgtatgaatcatgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgtcggccttcaccagtgagtctggaaggctgtccacacttagtgtatgaatcatgtg 380

                                                                       
Query: 181 tgtatgcaaatagctttatgagtaagtatacacatagacagttgatctcttaatccagtt 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 tgtatgtaaatagctttatgagtaagtatacacatagacagttgatctcttaatccattt 440

                 
Query: 241 ttcact 246
           ||||||
Sbjct: 441 ttcact 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)