BAC Information

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BAC

Clone NameMSMg01-470F01
Chromosome2 (Build37)
Map Location 135,672,262 - 135,672,505
singlet/doubletsinglet
Overlap genePlcb4
Upstream genePlcb1, LOC100043487, LOC100043786, LOC100043788
Downstream gene6330527O06Rik, Pak7, LOC668910, LOC100043492, BC034902, Ankrd5, Snap25, LOC668911
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470F01.T7 (MSMg01no470_f01.b1)MSMg01-470F01.TJ (MSMg01no470_f01.g1)
ACCAG553346AG553347
length742777
length of high quality
(start - end)
---244 (84 - 327)
definitionCHROMAT_FILE: MSMg01no470_f01.b1 PHD_FILE: MSMg01no470_f01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:11 2005CHROMAT_FILE: MSMg01no470_f01.g1 PHD_FILE: MSMg01no470_f01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCCTTATXXXXXXXXXXXXXXXXXXXXXXXCTATTGACCACACCACC
GCGGAATTCCCAGATTACCCCACACCCTTACGATGTTGGGGAGTGTTAAG
CTTTGAGAAACGCTCATTGTCTGCGAGCCGCCACAGTCTATAACCTTCCT
ACTCTGTAATAAAAAATACTAAGGAGCGAAGAAATGACCGGTTAATATGC
TCAAGGTGATTGCTGGCTTGGCTCTCTGGGCCAGGGAAAGATGATTCGCA
TAATATGACGAATGAGATTTCTACTGTGCCACAGTCTTTTTACTTATTTG
GTTACAGAACACGCCCCTGTTTTTTTTCAACCATTCCCAACTCTTGTTAC
CTCACACTATTTGTCCAGGTTGCCCAAGCCAGATAAAAGCGCACCCTGTA
TGCACAGTTCGCCCCTGCCCCAACTCTGTACCCACTGCCTCCCGCCCACA
TCACATATCTCTTGCACTTCGCATGTTCCTCCCCCCCACGAACCTCCCCC
TCTGTCCATGCCCATCCGCCCCTACCACCCCCATCTCCGAAACCCCCCCC
CCACCCCCATCCCTACCCCCTCACCGTACCACCCCTGCCCCCCCCCCCCC
CCCCCCCCTCTCTCCCATCTTCTCCCCCCCACCTTTCCTCTCTCACCCCC
TTTCCCTCGCCTTCCCCTCTTTCTTTCCCCCCCCCCTTCCCCCTCATCTC
CACCCCCCTCTCTCTCCCCCCCTCCTCCCCCCCACCTCCTCT
TATTCCTCGATTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACTGCATTTGCCACCT
CAGCAACCCTCCTTAGAAGAACCACACTGGTCCATGAAATATTTTAGGAA
GGAACTATTACTTCCCCATGGCCCAGGAATAATTTGGGGAGGTAAGTAAT
CTAGACAAGCAGGCATCAGCCTAATTATTAGAAGCACTGAACTACTGAGA
CACACATGTACACGAAACAGCACCAATGGTCCATGGCTATTGAAAGACAT
CAAGAATACTAAATACACAGGAAAAACTATCTCTCGGCGGCTATAAGCAA
TCTGCCTCAGATACGCCTGAGATCAGGCCCTCCTCTTGACTGAGTAGTGT
GAATCTAAGCTAAGCCCTTAACTCCCTTGAATCTCATCTCCCTTCACCGA
TGTATATTGATCGATAAACAATACCACCTTTTGCCTGTCCCTCCGCACTC
GTGCAATCTATATTTCCATGTCCCGCCTCCGCTCTTATCTAAATTTTCTC
CTCTTGCCTCCTTCCCCACTGTTCTTCTTTCCTTCTCCTCCCCCCCCCTA
GTTTCTTCACACCTTTTTCTTTCTTTTTCTACTTCTTTCCCGCCCTTTGG
CCCTTCTGACTCCACTCATCCTCTCCTACTTCCCCGTCCCTTTCTCACTA
TTTTCCTTCTCCTCCTTTATTCTCCCTACTTATGCCTTCCCCTCAACCTA
CTCCCTTCTAACATTCTCTTTCTGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_f01.g1 MSMg01no470_f01.g1 CHROMAT_FILE:
MSMg01no470_f01.g1 PHD_FILE: MSMg01no470_f01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:11 2005
         (244 letters)



>mm_chr2_135672062_135672705
          Length = 644

 Score =  441 bits (228), Expect = e-128
 Identities = 240/244 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactgcatttgccacctcagcaaccctccttagaagaaccacactggtccatgaaatatt 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 444 cactgcatttgccacctcagcaaccctccttagaagaaccgcactggtccatgaaatatt 385

                                                                       
Query: 61  ttaggaaggaactattacttccccatggcccaggaataatttggggaggtaagtaatcta 120
           ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 384 ttatgaaggaactattacttccccatgacccaggaataatttggggaggtaagtaatcta 325

                                                                       
Query: 121 gacaagcaggcatcagcctaattattagaagcactgaactactgagacacacatgtacac 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gacaagcaggaatcagcctaattattagaagcactgaactactgagacacacatgtacac 265

                                                                       
Query: 181 gaaacagcaccaatggtccatggctattgaaagacatcaagaatactaaatacacaggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gaaacagcaccaatggtccatggctattgaaagacatcaagaatactaaatacacaggaa 205

               
Query: 241 aaac 244
           ||||
Sbjct: 204 aaac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)