BAC Information

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BAC

Clone NameMSMg01-470K21
Chromosome2 (Build37)
Map Location 48,235,908 - 48,236,310
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC383691, LOC100041457, LOC383692, Acvr2a, Orc4l, LOC100041508, Mbd5, LOC100042719, LOC666709, LOC435666
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470K21.T7 (MSMg01no470_k21.b1)MSMg01-470K21.TJ (MSMg01no470_k21.g1)
ACCAG553626AG553627
length769775
length of high quality
(start - end)
366 (174 - 539)403 (74 - 476)
definitionCHROMAT_FILE: MSMg01no470_k21.b1 PHD_FILE: MSMg01no470_k21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:40 2005CHROMAT_FILE: MSMg01no470_k21.g1 PHD_FILE: MSMg01no470_k21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGACACACCGCGGAATT
CTCACCTGATGACACCGAATGGCAGAGAAGCACTTGAAAAAATGTTCAAC
ATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACC
TCACACCAGTCAGAGTGGGTAAGATCAAAAATTCAGGTGACAGCAGATGC
TGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGAGTG
CAGGCTTGTACAACCACTCTGGAAATCAGTCTTGCAGTTCCTCAGAAAAC
TGGACATAGTACTACTTTTTGATCCAGCAATACCTCTCCTGGGCATATAT
CTAGAATATGCCCCAACAGGTAAGAAGGACACATGCTCCACTATGTTCAT
AGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGATGCCCCT
CAACAGAGGAATGGATACAGAAAATGTGGTACATCTACCCAATGGAGTAC
TACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGTCAAATGGAT
GGACCTGGAGGGCATCCTCCTGAGTGAGGCAACACCTTCCCAAAGAAACT
CACACCATATGTATTCCCTGATAAGCGCATATTAGCCCCCCAACCTAGTA
TTACCCCCCATATACCATATCATTTTCGCAACACCCCTGCCACCTCAGAA
ACCATGGACCACCTCGAACGTGGGCACCCTATGGCCCCCCCTTTACATCT
CGGCCACCTCACCCCCCCN
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAAGTGTGACGGTCCCAGAGACAACTT
CTCGGCACACCAGAAAAGTATCCTTTGCACAGTACAAAGCTTCAGAAAGG
AATCCCCACTTGGTTAGCACGTGGGATTGGGTGTTCCTTGTTTCAGTTTC
TTCCAGTGAGTATCATATTTTCTAGTTCTTTCAGAATTCTCTTCCCATGC
ACCATTGTCAAAAAGGAAATCTGCAACATGAACATTTTCGCTCCAATAGC
TTCTGATTAAACAGAGCCTTGGATCTCTATGAAAACAGCCGCAAGATTTA
GTTCAAAATCAAAGCAGTAAACTCCACTTGTTATTTTCTGTGAATCAATG
GGCACTGGAGGGGATAATAATAGAGTAAGAAGTCATTTACTGGAAAAACA
AAATGAAGCANAACAAATGAACAAACAACCTCTACAAAAAAACTAAATAC
CCATGGGAATGTAATTAATTACCGAAGATTAAGTTCTCACAGCAGTAAGG
GTTTAATTTTCACCAGACCTTATTTTTCTACCCTGAAGACCTGCAAACGG
AACCGCTAAGGTCACCACCATTTAGTTTGGTTTAAATAAACCTATTCCCT
AAACCCCGCTACTTTTTTTTCAACAGAGTCGCTCTCTCTTTTTTTATTAA
CTATTCTTAACATTTGCCCCCTTCCTTTCTTTTCCCACTTTTCTTTTCTC
CTCTTTTTTCTTTTTCCCTTATTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_k21.g1 MSMg01no470_k21.g1 CHROMAT_FILE:
MSMg01no470_k21.g1 PHD_FILE: MSMg01no470_k21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:40 2005
         (403 letters)



>mm_chr2_48235708_48236510
          Length = 803

 Score =  735 bits (380), Expect = 0.0
 Identities = 397/403 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagtgtgacggtcccagagacaacttctcggcacaccagaaaagtatcctttgcacagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagtgtgacggtcccagagacaacttctcggcacaccagaaaagtatcctttgcacagt 260

                                                                       
Query: 61  acaaagcttcagaaaggaatccccacttggttagcacgtgggattgggtgttccttgttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaaagcttcagaaaggaatccccacttggttagcacgtgggattgggtgttccttgttt 320

                                                                       
Query: 121 cagtttcttccagtgagtatcatattttctagttctttcagaattctcttcccatgcacc 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagtttcttccagtgggtatcatattttctagttctttcagaattctcttcccatgcacc 380

                                                                       
Query: 181 attgtcaaaaaggaaatctgcaacatgaacattttcgctccaatagcttctgattaaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attgtcaaaaaggaaatctgcaacatgaacattttcgctccaatagcttctgattaaaca 440

                                                                       
Query: 241 gagccttggatctctatgaaaacagccgcaagatttagttcaaaatcaaagcagtaaact 300
            || |||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagtcttggatcacaatgaaaacagccgcaagatttagttcaaaatcaaagcagtaaact 500

                                                                       
Query: 301 ccacttgttattttctgtgaatcaatgggcactggaggggataataatagagtaagaagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccacttgttattttctgtgaatcaatgggcactggaggggataataatagagtaagaagt 560

                                                      
Query: 361 catttactggaaaaacaaaatgaagcanaacaaatgaacaaac 403
           ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 561 catttactggaaaaacaaaatgaagcaaaacaaatgaacaaac 603


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 803
Length adjustment: 9
Effective length of query: 394
Effective length of database: 794
Effective search space:   312836
Effective search space used:   312836
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)