Query= MSMg01no470_l20.b1 MSMg01no470_l20.b1 CHROMAT_FILE:
MSMg01no470_l20.b1 PHD_FILE: MSMg01no470_l20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:45 2005
(238 letters)
>mm_chr2_43460231_43460865
Length = 635
Score = 418 bits (216), Expect = e-121
Identities = 230/236 (97%), Gaps = 3/236 (1%)
Strand = Plus / Minus
Query: 3 aaaaattttaaaagattaaatcagttattatttatattctgatataaaaaggtttgatat 62
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 435 aaaaattttaaaagattaaatcag---ttatttatattctgatataaaaaggtttgatat 379
Query: 63 cttaaatcacttatttatatacacagagatatgatatacagatagagtaacttaatgtag 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 cttaaatcacttatttatatacacagagatatgatatacagatagagtaacttaatgtag 319
Query: 123 aattactaatatgcatgggagaaacacttttgttataggtagtgttataatgctagaaag 182
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 318 aattaataatatgcatgggagaaacacttttgttataggtagtgttataaagctagaaag 259
Query: 183 ttgttcagaattaaatgccatccttaaagtcacttgggtaaaaagtcaccctactg 238
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 258 ttgttcagaattaaatgccatccttaaagtcacttgcgtaaaaagtcaccctactg 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 635
Length adjustment: 9
Effective length of query: 229
Effective length of database: 626
Effective search space: 143354
Effective search space used: 143354
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no470_l20.g1 MSMg01no470_l20.g1 CHROMAT_FILE:
MSMg01no470_l20.g1 PHD_FILE: MSMg01no470_l20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:45 2005
(517 letters)
>mm_chr2_43286466_43287382
Length = 917
Score = 992 bits (513), Expect = 0.0
Identities = 516/517 (99%)
Strand = Plus / Plus
Query: 1 tatcaaagtgcccagaataaaactggatgctgcaaattagatgttgtgatacttaatcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatcaaagtgcccagaataaaactggatgctgcaaattagatgttgtgatacttaatcct 260
Query: 61 aacattcactcaagaagctgaggtaaggaggttgggagttcaaggacagcctgatataca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacattcactcaagaagctgaggtaaggaggttgggagttcaaggacagcctgatataca 320
Query: 121 ttggagatttttttccctcagaaatcaaacagaccaccagcagcaatgccttcattacca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttggagatttttttccctcagaaatcaaacagaccaccagcagcaatgccttcattacca 380
Query: 181 caacaaaacctcaggaagcaacaaagtcaataaataaaatcattatttaaattcagagat 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 caacaaaacctcaggaagcaacaaagtcaataaataaaatcattatttaaattcagaggt 440
Query: 241 tgaatgtttctttattctaaaacaacaaataacaatgtaattaatcagactggagctgtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaatgtttctttattctaaaacaacaaataacaatgtaattaatcagactggagctgtt 500
Query: 301 agaaaataataaatacataatactagaaattaaacttttctgagatatattaaatgtttc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaaaataataaatacataatactagaaattaaacttttctgagatatattaaatgtttc 560
Query: 361 aaatgaagcatagagctgaacatggttactgtaattgtagcactcagaaaccagaagcag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaatgaagcatagagctgaacatggttactgtaattgtagcactcagaaaccagaagcag 620
Query: 421 atagatctctgtgattttgaggacagcccggtctacgtagggaattgcaggcaagctgag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atagatctctgtgattttgaggacagcccggtctacgtagggaattgcaggcaagctgag 680
Query: 481 gctacatagtaagacttatctcaacaaaacgaagcag 517
|||||||||||||||||||||||||||||||||||||
Sbjct: 681 gctacatagtaagacttatctcaacaaaacgaagcag 717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space: 459849
Effective search space used: 459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
