BAC Information

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BAC

Clone NameMSMg01-470M14
Chromosome2 (Build37)
Map Location 48,271,657 - 48,271,790
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383691, LOC100041457
Downstream geneLOC383692, Acvr2a, Orc4l, LOC100041508, Mbd5, LOC100042719, LOC666709, LOC435666
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470M14.T7 (MSMg01no470_m14.b1)MSMg01-470M14.TJ (MSMg01no470_m14.g1)
ACCAG553707AG553708
length773831
length of high quality
(start - end)
174 (73 - 246)91 (75 - 165)
definitionCHROMAT_FILE: MSMg01no470_m14.b1 PHD_FILE: MSMg01no470_m14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:49 2005CHROMAT_FILE: MSMg01no470_m14.g1 PHD_FILE: MSMg01no470_m14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTAGTCCTCATGTCCCNAAANGANNACCANATGCCCCACCCGGCGGNATT
CATTGAGCTTCCCACACCGGGAGGACTGGAAACTGGCCTGGCACATGTGA
TAATTCAACAAGTCTGCTTAGGAAATCAAACAAAATGAAAACAAGTTATA
TGTTACAAGGGAAATGGGAGTTTCATGGGCTGTTACTAGGTTTTAGAAAT
TGGGATTTCTTAGAAATGCAGTGACCATGACCATGTATATCAGGTGATTG
TCTACCCAGATGTTATTCTACTTCAACCTTAGGATAGTCCCTGGCAAGCA
GCGCTGCTGGCTGTTAGGTCATTACNCAAGACCAGCTAGATCCTCACCTT
GAGGTCCTATTGACAATGTAGGAGGGTTGGTTTTTTGTTTGTCTGTTCGC
TTCGCTCGCCCCCCCCCCCTCTTTTTTTTCCCTTTCCCCCCCCCCTCCCC
CCCCCTTCCCCTTTTCCCCTCCCCTCCCCCTCTCACTCCATTTCCCTCCC
TCCCCTTCTGTTTCTTCCCCCTCCCCTCCCCCCTTCCCCCCCATCTATCC
TTTCTTCCCCTCTCTTCTCTCCCCCTCTCCTCCTCCACTCCCCTCCCCCC
CCTCCCCCCCTTCCCCCTTTCCCTCTCCCTTTTCACTCCCTTTTTCCCCC
TTCCCCCCCGTCCATCCCCCTTTTTTTTTTTTCTTTCCCCTCCTTTTCTC
CCCCTCTTTTCCCTCATTACCCTCCTCCCTTTCCTCTCCATCCTATCCCC
TCTCTCCCTTTTACCCCCCCCCC
CATGACAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTACAAAAAAACATTGCAAATCTACAGAGCTGGCACACTG
TTCTTTGCATAGATTTTCTTATGTGTTTCTCTCATTCTGTTTTGGCTTGG
GTTTGGGTTGTTTGTTTGTTTGCTTCCCTTTTCTTTTCCCCCCCCTTCTT
TCCCCCCTCTTTCTCCCCTCTTGCCCCCCCCCCCTCATTTCCCTTCCCCC
CTTTCTTCCTCTCTCCTTTCACATCCCTTTTTTCCCCTACTAATAAACCT
CCTATCTAATACACTTTTTTTTTTTTTTTCCCCCTCCTCTTTTCTCCCTT
CCCACAATCTCTTTTTCCCCCCTTCCTACCTACCCCCCTTCTACCCCCCT
ATCCCTTTTCATAAATCCCCCACACCCTTTTCTTTCCCCCCCCCTTCCCA
ACCCCCCCCTCTTTATTTCTTCCCCCCTCCCCTCCCAATTTCCCTTCTCC
CTTCCCTTTTTCCCTCTTCCATCCCCACCTCCCCACTTTATTACCCCCAC
CTCCTTCTCCCTTCTACCAACAACTCTTCCCCCTCTCTTTCCCCCCTTCC
CTTTCTCTTACCAATACCTCCCCTATATTTTCCCCCCCCTCACCCTTTCT
CCCCCCTCTCTCCCTCTCTTTTTTCCTTCACTACTCCCCTCCACTTCCCC
ATCAACTTTCCTCCCCCTTTTTTTCTCTTTCCCCCTTTCTTACTATAATA
CTACCCTCTCCATTACTCCACTTACACCCTTACAATTTCTCTTCTCCACC
CTTCTCCCATTTTACCTACTCCATTCACCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_m14.b1 MSMg01no470_m14.b1 CHROMAT_FILE:
MSMg01no470_m14.b1 PHD_FILE: MSMg01no470_m14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:49 2005
         (174 letters)



>mm_chr2_48271457_48272030
          Length = 574

 Score =  244 bits (126), Expect = 3e-69
 Identities = 132/134 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggactggaaactggcctggcacatgtgataattcaacaagtctgcttaggaaatcaaaca 60
           ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 334 ggactggaaactgtcctggcacatgtgataattcaacaagcctgcttaggaaatcaaaca 275

                                                                       
Query: 61  aaatgaaaacaagttatatgttacaagggaaatgggagtttcatgggctgttactaggtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaatgaaaacaagttatatgttacaagggaaatgggagtttcatgggctgttactaggtt 215

                         
Query: 121 ttagaaattgggat 134
           ||||||||||||||
Sbjct: 214 ttagaaattgggat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 174
Length of database: 574
Length adjustment: 8
Effective length of query: 166
Effective length of database: 566
Effective search space:    93956
Effective search space used:    93956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)