Query= MSMg01no470_n15.b1 MSMg01no470_n15.b1 CHROMAT_FILE:
MSMg01no470_n15.b1 PHD_FILE: MSMg01no470_n15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:54 2005
(477 letters)
>mm_chr2_9848487_9849361
Length = 875
Score = 820 bits (424), Expect = 0.0
Identities = 464/484 (95%), Gaps = 16/484 (3%)
Strand = Plus / Minus
Query: 1 aattcctccca---ttcccggaatatttgcttagatactgaagctagaaaagtggaaaac 57
||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 aattcctcccaagttt---ggaatatttgcttagatactgaagctagaaaagtggaaaac 635
Query: 58 ttggtgtgtttgttttccattcccatacaacaaataggcctggaatttagctgttttaaa 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 ttggtgtgtttgttttccattcccatacaacaaataggcctggaatttagctgttttaaa 575
Query: 118 caatgggcctcccccgctggcttctgagggtttgagcagttttcactcaggtcttagaag 177
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 caatgggcct-ccccgctggcttctgagggtttgagcagttttcactcaggtcttagaag 516
Query: 178 ttgcagtcaaggaaacgtcatctgaaggcctcgatgaggactgggtctaagttcaccagc 237
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 ttgcagtcaaggaaacgccatctgaaggcctcgatgaggactgggtctaagttcaccagc 456
Query: 238 ccaccagctcctgccaaggcagacaccgcatttg----ttctttccccagatggggcaag 293
|||||||||||||||||||||||||||||| | ||||||||| ||||||||||
Sbjct: 455 ccaccagctcctgccaaggcagacaccgca---gccgc--ctttccccacatggggcaag 401
Query: 294 gggagcatggagcactcataggtggtctccaaagggcgattgctggaagtgagtgacttt 353
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 400 gggagcatggagcactcataggtggtctccgaagggagattgctggaagtgagtgacttt 341
Query: 354 catagtatttaaatctgccagtgagtgcacaccagactgactaccacatttaggctaggt 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 catagtatttaaatctgccagtgagtgcacaccagactgactaccacatttaggctaggt 281
Query: 414 ctatctggggctttccataaaagtgaaaatgcaaaaacaggaagactagacatacatatt 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ctatctggggctttccataaaagtgaaaatgcaaaaacaggaagactagacatacatatt 221
Query: 474 catg 477
||||
Sbjct: 220 catg 217
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 875
Length adjustment: 10
Effective length of query: 467
Effective length of database: 865
Effective search space: 403955
Effective search space used: 403955
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no470_n15.g1 MSMg01no470_n15.g1 CHROMAT_FILE:
MSMg01no470_n15.g1 PHD_FILE: MSMg01no470_n15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:54 2005
(514 letters)
>mm_chr2_9627444_9628357
Length = 914
Score = 868 bits (449), Expect = 0.0
Identities = 497/523 (95%), Gaps = 18/523 (3%)
Strand = Plus / Plus
Query: 1 ctgtgagatagcccctgatcgtcacagaagggtcatggaacaagtgtgtgcccatataca 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 197 ctgtgagatagcccctgatcgtcacagaagggtcatggcacaagtgtgtgcccatataca 256
Query: 61 tccactcaatccaatttaattttaaattcaaacaaacatgtaaaggtaagcaatgctcga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tccactcaatccaatttaattttaaattcaaacaaacatgtaaaggtaagcaatgctcga 316
Query: 121 ggaaaatgctcaagtgtgtcctctgacttctgcacatacacacaagcacatgtgcatacg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ggaaaatgctcaagtgtgtcctctgacttctgcacatacacacaagcacatgtgcatacg 376
Query: 181 cactggcacacaccagaacatttatacacacttatacaaa-----------tggagggac 229
|||||||||||||||||||||||||||| ||||||||||| | ||
Sbjct: 377 cactggcacacaccagaacatttatacatacttatacaaaaaaaaatcttat------ac 430
Query: 230 aaaaaaaaaatcttcctgttatgaatttgaccaaatccgtcccccgggtgccacggagaa 289
||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 431 aaaaaaaaa-tcttcctgggaggaatttgaccaaatccgtcccccgggtgccacggagaa 489
Query: 290 aagcatagaaagattcagtaaatgggtgagttcacgttaagtgatatccaacaatcaggc 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 aagcatagaaagattcagtaaatgggtgagttcacgttaagtgatatccaacaatcaggc 549
Query: 350 accagaactgctgacgctcagagaagaatctatactgggaatccaagaaaactacaagat 409
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 550 accagaactgctgacgctcagagaaggatctatactgggaatccaagaaaactagaagat 609
Query: 410 tctcagaaaggaaatgaggaggagatcataaagacacccagccattgtctgtatagctgg 469
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 tctcaggaaggaaatgaggaggagatcataaagacacccagccattgtctgtatagctgg 669
Query: 470 tgctttcaaatattgtctaactctatccttataactaatcctt 512
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 tgctttcaaatattgtctaactctatccttataactaatcctt 712
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space: 455616
Effective search space used: 455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
