BAC Information

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BAC

Clone NameMSMg01-470O12
Chromosome2 (Build37)
Map Location 160,992,246 - 160,992,487
singlet/doubletsinglet
Overlap genenone
Upstream geneGm826, Mafb, LOC100043892, Top1, Plcg1, Zhx3, Lpin3, Emilin3, Chd6, LOC100043693
Downstream geneLOC100043694, LOC383769, LOC629655, LOC383770, Ptprt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470O12.T7 (MSMg01no470_o12.b1)MSMg01-470O12.TJ (MSMg01no470_o12.g1)
ACCAG553798AG553799
length750756
length of high quality
(start - end)
46 (88 - 133)242 (74 - 315)
definitionCHROMAT_FILE: MSMg01no470_o12.b1 PHD_FILE: MSMg01no470_o12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:58 2005CHROMAT_FILE: MSMg01no470_o12.g1 PHD_FILE: MSMg01no470_o12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCAATACTGCGGGCCTAAACGACCCCCACTTGCACAACACCGCCGGAAT
CCAGCCCTTACCCCCACCGGCGATGAACAGCAATGCGGAAGTGTAAGCTG
AATAAACCCTATTTGAAGCAATTTGAAGCCAGACCCACCAGACAATGATG
GTTCTCAGAGTAACCCACATTTCCATGCTGAACAGAGAAGTTTGCTTAAG
AACTAAAAATAGCACTTACAGACAAGTTAGGGACACTAGTACAGTTTGTA
TTTTTAAAATTCTGACTGAAGGCAGACTCCGTATACCTAACTATCAAAAT
GGTGCTGAGCAAGCTTCGTGTTTCTCTGTACTGGGCTAAGTGTGACGGGG
TAGAAGCAGCTCACAGCTTGGTGAGAAGACAGGGCTACGATTCTATTAAA
CAATAGCCTCCTCCCCTTCTATGTCAACAAGCAATGCTACAGGAACACAG
CACGAGGGTCTTATGACCACATACCCTTGACGCTCAAGGACAACCTAGAG
GCCTGCGGCTCCCACCTTGGAACTGGCACGGCATTTGGCAAGGAACAACC
CCACACATAGGGCTGACGCAGCTCGACCCCCCCAGCACAGCCCCCGGTGC
CTATGCCCGCCTTTCTCCATCCCGTACACACCCCTCCCCTCACCCTGCCC
CCTTCTTTCTTTTCTCCCCCCCATCTTCCGCCCCAATGTCCCCACCTAAC
GCCCCCCCCTTCCACTCTGTTTACTTCTCCAGCCATTTTTCCCCCCCCCN

CGATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTCGCAAAAATTCCATCAATGAGGAATCTGTTCTCTGGATC
CGCTTTAACAGTGTAGCCTGATCCTGCAGTTCTTGTGTTATGCCTAGATA
TCTTTGTCCCCTCAAGGGACAGCTCTTAACTAATGGATGGCAAACATGGG
AGCCATCCCTCCAGCTGTGTTGTCTCCACCACTGCCTCCAACTGTGGGGC
AGTTTAAAGTTCTCTCCAAACTTCCCAGGAAAGACCAAAGCAATCAACCT
TTAGGGGGTCCTGATGTCTGTCTCTGCCTAAACTTCCCTAACTTTTTTTT
TTTTTTTTGGCTTATCGAGACAGGGTTTCTCTGTATAGTCCTGGCTGTCC
TGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCCCCTG
CCTCTGCCTTTGCCTCCCAAGTGCTGGGATTAAAGGTGTGCGCCACCACG
CCCGGTCCTAACTCCTTTTTTACTATCATTATTCTTTAATCCTTTTTTTA
CATCCAGTCTTTATCCCCTTCCCATTCTGCCTTCCCTTAATTTCTCCCCA
TCTTATACCTCTTCCCCTACCCCATCCCACATTTTCCAGAGAATGTCCCC
CCTTTCTTACTATCCCCTTCTCCCTTAACTTCCCCACTCCCTTGGGCGCC
TTCTAGTCTCCTCTAGGGTTCAGTGTCGATTCCTCTTCCCCAATGCGATG
CAAGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_o12.g1 MSMg01no470_o12.g1 CHROMAT_FILE:
MSMg01no470_o12.g1 PHD_FILE: MSMg01no470_o12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:58 2005
         (242 letters)



>mm_chr2_160992046_160992687
          Length = 642

 Score =  453 bits (234), Expect = e-132
 Identities = 240/242 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcaatgaggaatctgttctctggatccgctttaacagtgtagcctgatcctgcagttct 60
           ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct: 442 atcaatgaggaatctgttctctggatcggctttaacagtgcagcctgatcctgcagttct 383

                                                                       
Query: 61  tgtgttatgcctagatatctttgtcccctcaagggacagctcttaactaatggatggcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tgtgttatgcctagatatctttgtcccctcaagggacagctcttaactaatggatggcaa 323

                                                                       
Query: 121 acatgggagccatccctccagctgtgttgtctccaccactgcctccaactgtggggcagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 acatgggagccatccctccagctgtgttgtctccaccactgcctccaactgtggggcagt 263

                                                                       
Query: 181 ttaaagttctctccaaacttcccaggaaagaccaaagcaatcaacctttagggggtcctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ttaaagttctctccaaacttcccaggaaagaccaaagcaatcaacctttagggggtcctg 203

             
Query: 241 at 242
           ||
Sbjct: 202 at 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)