Query= MSMg01no470_p17.b1 MSMg01no470_p17.b1 CHROMAT_FILE:
MSMg01no470_p17.b1 PHD_FILE: MSMg01no470_p17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:04 2005
(429 letters)
>mm_chr2_104798136_104798964
Length = 829
Score = 741 bits (383), Expect = 0.0
Identities = 417/435 (95%), Gaps = 12/435 (2%)
Strand = Plus / Plus
Query: 1 ttaaagagagcatggcagaaagagaaatgctgaggtatgactataccaatatcaaagagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaaagagagcatggcagaaagagaaatgctgaggtatgactataccaatatcaaagagg 260
Query: 61 caaagtagagaaaacagcatgcatggtacaggggcacaccaaacacataggtcaaggaaa 120
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 caaagtagagaaaacagcatgcatggtacaggcacacaccaaacacataggtcaaggaaa 320
Query: 121 tagaatagagaacccagatataaaaatacatttcttatttgtctatttttattttgcata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagaatagagaacccagatataaaaatacatttcttatttgtctatttttattttgcata 380
Query: 181 gacatagtatagatacctattttgtttttctgtttttttacaaaactataaaatgtacat 240
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 gacatagtatagataactattttgtttttttgtttttttacaaaactataaaatgtacat 440
Query: 241 tggattttttata------ttctcattaacaaatgatgctagagaaattgaatttccaca 294
|||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgga------aaaaagagattctcattaacaaatgatgctagagaaattgaatttccaca 494
Query: 295 tacagtactctaaaactgggcctttatctttcactctgaactaaatcaattcaaaattga 354
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 495 tacagtactctaaaactgggcctttatctttcaccctgaactaaatcaattcaaaattga 554
Query: 355 ccaaagaccttaatgtaaggtataaaaaaaacactccaagatataggtataggtaagagt 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ccaaagaccttaatgtaaggtataaaaaaaacactccaagatataggtataggtaagagt 614
Query: 415 tttgttttttgtttt 429
|||||||||||||||
Sbjct: 615 tttgttttttgtttt 629
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 829
Length adjustment: 9
Effective length of query: 420
Effective length of database: 820
Effective search space: 344400
Effective search space used: 344400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no470_p17.g1 MSMg01no470_p17.g1 CHROMAT_FILE:
MSMg01no470_p17.g1 PHD_FILE: MSMg01no470_p17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:04 2005
(474 letters)
>mm_chr2_104963648_104964521
Length = 874
Score = 878 bits (454), Expect = 0.0
Identities = 469/474 (98%)
Strand = Plus / Minus
Query: 1 agaagctgcctgcgctcagttggaggactcctggtcagactggacgctcctgagattccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 agaagctgcctgcgctcagttggaggactcctggtcagactggacgctcctgagattccc 615
Query: 61 ccttgcccaactatgtctagaagtccaagcggcaggaagccagtgctctgggacccgcaa 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 ctttgcccaactatgtctagaagtccaagcggcaggaagccagtgctctgggacccgcaa 555
Query: 121 accttggggtcacagaataccccattcctttctcctctggttaccccagcagacgccttg 180
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 554 accttggggtcacagaataccccatccctttctcctctggttaccccagcagacgccttg 495
Query: 181 ctacactgacttgggtgccctgagctgactgtgagagctacagacagcctgcccaggggg 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 494 ctacactgacttgggtgccctgagctgactgtgagagctactgacagcctgcccaggggg 435
Query: 241 tgttgcacatgccgtccaccctaaacccccctcctttgaggcctgcccgggttccagaaa 300
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tgttgcacttgccgcccaccctaaacccccctcctttgaggcctgcccgggttccagaaa 375
Query: 301 aacgaaggtcacggcgaactaggtgcttcctactcttccgttttctccaccacgttggtg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 aacgaaggtcacggcgaactaggtgcttcctactcttccgttttctccaccacgttggtg 315
Query: 361 cagcctcgggcctcagaaaggataacgttccaaactgtctgtctgcaggcaaagcctgct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 cagcctcgggcctcagaaaggataacgttccaaactgtctgtctgcaggcaaagcctgct 255
Query: 421 attaaactcaagccagcaggggaaactgagacccaactgagataggaaaagcaa 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 attaaactcaagccagcaggggaaactgagacccaactgagataggaaaagcaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space: 400896
Effective search space used: 400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
