BAC Information

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BAC

Clone NameMSMg01-471A01
Chromosome2 (Build37)
Map Location 107,704,512 - 107,705,068
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC677260, 2700007P21Rik, LOC383739, Fshb, Kcna4
Downstream geneLOC100043078, LOC668790, LOC623003
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-471A01.T7 (MSMg01no471_a01.b1)MSMg01-471A01.TJ (MSMg01no471_a01.g1)
ACCAG553872AG553873
length780738
length of high quality
(start - end)
161 (69 - 229)560 (80 - 639)
definitionCHROMAT_FILE: MSMg01no471_a01.b1 PHD_FILE: MSMg01no471_a01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:06 2005CHROMAT_FILE: MSMg01no471_a01.g1 PHD_FILE: MSMg01no471_a01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GATATGCGCGTCTCTCCAGATTTGACTCATAATTTTGCGTCGCTAATCGA
CTCACTATTTCCGAGAGGATCCGCGGAATTCATGACATTCTTAGGCAAAT
GGTGGAACTAGAAAATATCATCCTGAGTGAGGTAACCCGTCACAAAAGAA
CACACATAGCATGCACTCACTGATAACTGGATATTAGCTCAAAAGCTCAG
AATATCCTAAATACAATTCACCAACCACATGGAAGTTCCAGGAAAGGAAA
GGAAGAAGCCCCAATGGGGGGCAAAGGCCTTGTCAGACTCCTTTTTTTTT
TTAGTAAATGCCCGCCAACACAAAAAAAAAAATAAAAGTGGGGTTTTTAT
TACCCCCCTAAGAAAAGGGCTTTTTCCCAAAGAATATTGTGCGGGAAACC
CTTCCTTCTATTGATAAAAACCTCCCCCACGCGGACTCTTTTTGCGCTGG
GAGAAATAAAATAATAATCCGCCCCTCCTTTTTTCCCGTTCTTAAATAAA
AAAAATAGGTTGGGCTTGTTTTATCTTTTCACACTAACACCCACCACACA
CTCAGCTATTCGTTTTCTTTTTTCTCGCCCTCCTTCCACTCCTTTTTTTA
TAAGCTGCTCCCTTTCGTCCTGTCTCTCCGTTTTCTCTTTTCCCTCCNCC
CTTCTTTTTTACGCCCCTCCACTCGCTCGCTCTCTCTCTCGCCCCAACTC
TCCCCCCCCCCTTCTATCTCTTTTCTTTTTGCCCTCCAGAACCCTCTCTA
TTGTCTTTTTATTTTTTCTAATTCACGCCG
TTACCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAGAAACTTTGTTATGTAAC
AGAAATTATATGAATCTCCAAAGTATTGTAAGCTACAGTTCCTTCCTGCC
TGCCTGCCTTTCCTCCTGCCTGCCTGCCTGCCTGCCTTCCTCCTTTCTTC
CTGTTTTGATCAAGAACACTCATATTGTGGATGCCCACAAGGAATTGGAT
AACCCTATGATGAAGTGATATAAATAGAATGCTCATTTGTCAAAATTTCA
AAAAGAAAAAAAGACAAAAGGAAAAATTAGCTGTTTTTCTGAATAGGCTT
GGAATACACATTTCTTGCTTGATTACACACACATTTAATGTTAAAAATAT
GTGTTTTTAGACCACATTTTCTGTGCATTAGGGAAATGCCTTCTAGGCCA
AGAACCAACATTTTCAGACCTGAGATCCTTTGACAAAATGTATCTGGATT
TTGGTGAAATGGCCTAAGCTTGGTCATGGATATTCTCCTATGTGGGGCTT
TGAATGTGGATCCCATGGTGAGATAAAGAAAGACAATTTGTTTAGACATA
GCAACATATATTATCCCCAGGTAACTGGAGGTACTGGAGGATGGAGGAAA
CAGGGTTGAAAATGTGGGGCCTTCCAGGGATGTGACAATGAGCAATCTGA
GCACATTATTGAAACCTGCCTCACAACACATATAGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no471_a01.g1 MSMg01no471_a01.g1 CHROMAT_FILE:
MSMg01no471_a01.g1 PHD_FILE: MSMg01no471_a01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:06 2005
         (560 letters)



>mm_chr2_107704312_107705268
          Length = 957

 Score = 1029 bits (532), Expect = 0.0
 Identities = 553/560 (98%), Gaps = 3/560 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttagaaactttgttatgtaacagaaattatatgaatctccaaagtattgtaagctacagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttagaaactttgttatgtaacagaaattatatgaatctccaaagtattgtaagctacagt 260

                                                                       
Query: 61  tccttcctgcctgcctgcctttcctcctgcctgcctgcctgcctgccttcctcctttctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccttcctgcctgcctgcctttcctcctgcctgcctgcctgcctgccttcctcctttctt 320

                                                                       
Query: 121 cctgttttgatcaagaacactcatattgtggatgcccacaaggaattggataaccctatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 cctgttttgatcaagaacactcatattgtggatgcccacaaggaattggataa-cctatg 379

                                                                       
Query: 181 atgaagtgatataaatagaatgctcatttgtcaaaatttcaaaaagaaaaaaagacaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 380 atgaagtgatataaatagaatgctcatttgtcaaaatttcaaaaagaaaaagagacaaaa 439

                                                                       
Query: 241 ggaaaaattagctgtttttctgaataggcttggaatacacatttcttgcttgattacaca 300
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 -gaaaaattagctgtttttctgaataggcttggaatacacatttcttgcttgattacaca 498

                                                                       
Query: 301 cacatttaatgttaaaaatatgtgtttttagaccacattttctgtgcattagggaaatgc 360
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 cgcatttaatgttaaaaatatgtgtttttagaccacattttctgtgcattagggaaatgc 558

                                                                       
Query: 361 cttctaggccaagaaccaacattttcagacctgagatcctttgacaaaatgtatctggat 420
           |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 559 cttctaggccaagaacaaacattttcagacctgagaccctttgacaaaatgtatctggat 618

                                                                       
Query: 421 tttggtgaaatggcctaagcttggtcatggatattctcctatgtggggctttgaatgtgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tttggtgaaatggcctaagcttggtcatggatattctcctatgtggggctttgaatgtgg 678

                                                                       
Query: 481 atcccatggtgagataaagaaagacaatttgtttagacatagcaacatatattatcccca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 atcccatggtgagataaagaaagacaatttgtttagacatagcaacatatattatcccca 738

                               
Query: 541 ggtaactggaggtactggag 560
           |||| |||||||||||||||
Sbjct: 739 ggta-ctggaggtactggag 757


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 957
Length adjustment: 10
Effective length of query: 550
Effective length of database: 947
Effective search space:   520850
Effective search space used:   520850
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)