BAC Information

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BAC

Clone NameMSMg01-471F17
Chromosome2 (Build37)
Map Location 138,868,627 - 138,869,343
singlet/doubletsinglet
Overlap genenone
Upstream geneBtbd3
Downstream geneLOC628103, C130053K05Rik, LOC100043792, 5430433G21Rik, Tasp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-471F17.T7 (MSMg01no471_f17.b1)MSMg01-471F17.TJ (MSMg01no471_f17.g1)
ACCAG554143AG554144
length771761
length of high quality
(start - end)		721 (44 - 764)687 (72 - 758)
definitionCHROMAT_FILE: MSMg01no471_f17.b1 PHD_FILE: MSMg01no471_f17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:35 2005CHROMAT_FILE: MSMg01no471_f17.g1 PHD_FILE: MSMg01no471_f17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTATCTTACTTCCTTGGTTAGAAGGGCAGTACAGTCTCTCCCAATC
TGGATAATAACATGCAACAAGCCATCCGTCATTTAAATTGTCAAAGACAC
CACTGAAGAATGGAATTTGTTTACAAAGAGGAGGAGGAAGCAAGGGGAAA
TTTTTGATTGGGACCTGGCAAGGGTGACTTCAGGTGGAGGAGTGACTGCC
TTCTGTTTCTCCACAGGATCTGAAAGGTGAATGGTACAAAGGGGGAGGAA
AAAATAGAGCAGTCTCAAATTGCCCAGACTGACTGGGACATGCTGATCAG
AGCACTACAGTCTACATGGTGCAAGTTTTCTGCTCCCAGTGTCAGAGGTC
TCCAGCAAAAAACAAGTTCTGACTTGTTTCTTATGAGAGGCAAGTTCCAC
CTGTGCACAGGGTCTTTAAACGCTGAAGTACAACACCTCTTTTTGCAATC
TTACCAATGGCCTTGATGGGGGTTTGCATGAAGGCACAGTTCAGGACTGT
TGAAATCTGGGTAGCTAACAGTTGCCTTTATGTCTTCCAGATCATGCATA
GTTTCTCATGAAAAGAAAAATATTTTGATTGTTCAACTAAAAATTTTAGA
CGGTGGAATAGAAAGTCACAAATACGCTTTAGAACACATGTAAACTTTGT
TAGAGTTGGTTGTTACAACAAGTTTCATAAGAAAAGTGGCAATAAAGCAC
AGTCAATAAAGGGATTTCAAN

TTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATAGAGAGAATAAGCCCACCAACAGCACT
CACAATGGCCTCTGCATTAGTTCCCATTCCAGCTTCCTGCCTGAAGAATT
TGGAACTTTAAAATCCCTTTCCTCCCCAAGTTGGTTTTGGTCAGTGAGGT
CAGTCGGTGTTTGCTCTGACAACAGAAACCAAACTAAGACAATACCTTAG
TCAATTTTCAGTTTGATGACCTTGGCAGTCCAGAGGCTACTACACATGAG
AATTTTATAAATAGTTCTGCACTATGCCTCATCTGATGTTCAGTTGGTTA
AATTGGGTTGTGGATGTTTGAGAGGAAGTGCCACTCATATCCCATCATGC
CCAAACCACATATACTTAACATGGTGCTCATGATGATCTTATCCTGCTCT
TCTCTCCGAGGTGGTTTTTGCCAGATGTATCATTCAGAAGTCAGTTTTGG
TGTTTGTTTCTTTCGCCCTTTCCTTACCATATGCTTCAGTACAAGTCACC
GTGTGTAACCAAAGATAAGGAAGAAGAGCTATATCTCACTTTTTGGCAGT
CAGCAACTGCATGGATAATTTAGGATTCTTCTGCAAGAGACAGGTAGCAT
TGTTTCTAATTATCTGTTTATTTAATCAATTATTTTGGTAATATGCTCCC
TTGGATTTTAAACCTGGATTTGCATTTCACTTCTAGTTTTACTTATCACT
TACCTTGTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no471_f17.b1 MSMg01no471_f17.b1 CHROMAT_FILE:
MSMg01no471_f17.b1 PHD_FILE: MSMg01no471_f17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:35 2005
         (721 letters)



>mm_chr2_138868423_138869543
          Length = 1121

 Score = 1319 bits (682), Expect = 0.0
 Identities = 709/718 (98%), Gaps = 2/718 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttatcttacttccttggttagaagggcagtacagtctctcccaatctggataa 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 gaattctttatcttatttccttggttagaagggcagtacagtctctcccaatctggataa 862

                                                                       
Query: 65  taacatgcaacaag-ccatccgtcatttaaattgtcaaagacaccactgaagaatggaat 123
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 taacatgcaacaagtcc-tccgtcatttaaattgtcaaagacaccactgaagaatggaat 803

                                                                       
Query: 124 ttgtttacaaagaggaggaggaagcaaggggaaatttttgattgggacctggcaagggtg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 ttgtttacaaagaggaggaggaagcaaggggaaatttttgattgggacctggcaagggtg 743

                                                                       
Query: 184 acttcaggtggaggagtgactgccttctgtttctccacaggatctgaaaggtgaatggta 243
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 742 acttcaggtggaggagtgactgccttctgtttctccacaggatctgaaagatgaatggta 683

                                                                       
Query: 244 caaagggggaggaaaaaatagagcagtctcaaattgcccagactgactgggacatgctga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 caaagggggaggaaaaaatagagcagtctcaaattgcccagactgactgggacatgctga 623

                                                                       
Query: 304 tcagagcactacagtctacatggtgcaagttttctgctcccagtgtcagaggtctccagc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tcagagcactacagtctacatggtgcaagttttctgctcccagtgtcagaggtctccagc 563

                                                                       
Query: 364 aaaaaacaagttctgacttgtttcttatgagaggcaagttccacctgtgcacagggtctt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 aaaaaacaagttctgacttgtttcttatgagaggcaagttccacctgtgcacagggtctt 503

                                                                       
Query: 424 taaacgctgaagtacaacacctctttttgcaatcttaccaatggccttgatgggggtttg 483
           |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 502 taaacgctgacgtacaacacctctttttgcaatcttatcaatggccttgatgggggtttg 443

                                                                       
Query: 484 catgaaggcacagttcaggactgttgaaatctgggtagctaacagttgcctttatgtctt 543
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 catgaaggtacagttcaggactgttgaaatctgggtagctaacagttgcctttatgtctt 383

                                                                       
Query: 544 ccagatcatgcatagtttctcatgaaaagaaaaatattttgattgttcaactaaaaattt 603
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 382 ccagatcatgcatagtttctcatgaaaagaaaaatattttgatttttcaactaaaaattt 323

                                                                       
Query: 604 tagacggtggaatagaaagtcacaaatacgctttagaacacatgtaaactttgttagagt 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tagacggtggaatagaaagtcacaaatacgctttagaacacatgtaaactttgttagagt 263

                                                                     
Query: 664 tggttgttacaacaagtttcataagaaaagtggcaataaagcacagtcaataaaggga 721
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 262 tggttgttacaacaagtttcataagaaaagtggcaataaagcaaagtcaataaaggga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 721
Length of database: 1121
Length adjustment: 10
Effective length of query: 711
Effective length of database: 1111
Effective search space:   789921
Effective search space used:   789921
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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