BAC Information

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BAC

Clone NameMSMg01-471M15
Chromosome2 (Build37)
Map Location 179,613,867 - 179,806,882
singlet/doubletdoublet
Overlap geneCdh4, Taf4a, Lsm14b, Psma7, Ss18l1, Gtpbp5
Upstream geneLOC665264, LOC100043168, LOC100039413
Downstream geneHrh3, Osbpl2, LOC100039470, Adrm1, Lama5, Rps21, Cables2, BC066135, Gata5, EG622283, Slco4a1, Ntsr1, 1600027N09Rik, Ogfr, Col9a3, Tcfl5, Dido1, 2310003C23Rik, 1700019H03Rik, Bhlhb4, OTTMUSG00000016394, Ythdf1, Birc7, C030019F02Rik, LOC100039607, Arfgap1, Col20a1, Chrna4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-471M15.T7 (MSMg01no471_m15.b1)MSMg01-471M15.TJ (MSMg01no471_m15.g1)
ACCAG554474AG554475
length770784
length of high quality
(start - end)		563 (72 - 634)592 (77 - 668)
definitionCHROMAT_FILE: MSMg01no471_m15.b1 PHD_FILE: MSMg01no471_m15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:10 2005CHROMAT_FILE: MSMg01no471_m15.g1 PHD_FILE: MSMg01no471_m15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(179,613,867 - 179,614,423)(179,806,491 - 179,806,882)
sequence
NCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCG
CGGAATTCTCAGCTTTCCACTAAGTGTGGAGGAGAGAGAGATTTTGATCC
AGCACAAGTTCCTAGGACTTAAAATTTAGCATCTTAAAATTGGAATAGAC
TCTGTACCCTTAATTACACTCAGGCACACAGCCATAAGTCACTAATTGGG
GGCTAGTTCTTCATGCTCTGAGGTGGTGGGCACAGGATTAAACCCAGAGC
TTGCATCCCTGACCACCCAGCATCACCTCCACTTCCTCAACCCTCCCTCA
GGGTCCACCCTCAGACAATGTTTGCCTCCAGTGCCTCTAAAGGACCCCAC
AGACAGGCCAGAATACAGTGAACCAGACCCAGGCCCCACCCAGCAGAAGA
CCTGGTAAGAAGGCAGAGATGCAGGTAGCTTACAGGAAAAGGGTACCAAG
GACCCACAGCAGCAAGTCACCCCTCAGCCTGGAACCAAGACTTCAAGGTC
TGTGTCCAAAGAAGTACTTTACTCTCTTTTGGGTCCCTGGGCCCCCACCC
GGCCAAGCAGAGTATGAAGGTGAAGGCACTGGGTTGGAAGAAGGAAGCAA
ACCAGGGTACCCTGTGTCATCCTGGCTACCCACTAACCAGGGAGCATCTC
AGAGCCCACCATAATGCCAGTTCCCATGTGTTCTTACCTCATGGAGCCTG
CGNAGCCTGCATGCCCACCTAGATGTCTGCAACTTGACAGCCTAAGACTC
ACAGATATATCAATACTTAC

NNCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACGGTGCTACCGTGTGAGAGGGC
CACTGCTGCTATACAGGATGCTAAGCTCCCGGCTACTGTCCACAAGAGGT
ATGTCCAGGAACCTTCCGCACTGGTTTCACAGTGAACCAATTGATCTGAT
TGTGTAGCTGGCACTAGAGACATGTGCCAAGATGTCTTCAATGAGAAAGA
AGAAAGCACTGTGGAAGAGGGGTGTAGCTCAGTTGGTAGAATGCCTACCG
ACCTAGCATGCACAAAGCCCTGGGGTTGACCCCTGGAATCACATAATCCA
GGCATGCCACCACTTACTCAGGAGGTGGAGGTAGGAAGGTCAGAAGTTCA
AGGTCATCTTCTACTACTTAGCAAGTTCAAGGCCAGCCAGGGAGCCAGAC
ACATGCAAACCTGTCTTAAAAAAAGAGAAAGGGGGAAAAAAAAAGCATTC
TTGAGGAATGTTTTCATTTCTTCAGTGTTATTCTTTTATAGGCTAAGCAC
AATTGGTTAACAGTATTCACAGTTAACTAACTTAATTCTAAGCATTCCAT
TTTCACTTTGCTACCGGATATTAAATCCCACGCGGGCATTACTGTTTCTG
CTACATACTTTTACACTTCATTACATATGTTTGTGATCTACTTCGTTCTT
CATGTGGAAAACATTAGAAACTGGAGTATCATTTTGTCACCTGACAACTC
ACATTACATGGGTTTTACTTAATTATATGCCATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no471_m15.b1 MSMg01no471_m15.b1 CHROMAT_FILE:
MSMg01no471_m15.b1 PHD_FILE: MSMg01no471_m15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:10 2005
         (563 letters)



>mm_chr2_179613661_179614623
          Length = 963

 Score = 1023 bits (529), Expect = 0.0
 Identities = 550/557 (98%)
 Strand = Plus / Plus

                                                                       
Query: 7   ggaggagagagagattttgatccagcacaagttcctaggacttaaaatttagcatcttaa 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ggaggagagagagattttgatccagcacaagttcctaggacttaaaatttagcatcttaa 266

                                                                       
Query: 67  aattggaatagactctgtacccttaattacactcaggcacacagccataagtcactaatt 126
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aattggaatagactctgtaaccttaattacactcaggcacacagccataagtcactaatt 326

                                                                       
Query: 127 gggggctagttcttcatgctctgaggtggtgggcacaggattaaacccagagcttgcatc 186
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 327 gggggctagttcttcatgctctgaggtggtgggcacaggattaagcccagagcttgcatc 386

                                                                       
Query: 187 cctgaccacccagcatcacctccacttcctcaaccctccctcagggtccaccctcagaca 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 cctgaccacccagcatcacctccacttcctcaaccctccctcagggtccaccctcagaca 446

                                                                       
Query: 247 atgtttgcctccagtgcctctaaaggaccccacagacaggccagaatacagtgaaccaga 306
           |||   ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 447 atggaggcctccagtgcctctgaaggaccccacagacaggccagaatacagtgaaccaga 506

                                                                       
Query: 307 cccaggccccacccagcagaagacctggtaagaaggcagagatgcaggtagcttacagga 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 cccaggccccacccagcagaagacctggtaagaaggcagagatgcaggtagcttacagga 566

                                                                       
Query: 367 aaagggtaccaaggacccacagcagcaagtcacccctcagcctggaaccaagacttcaag 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 aaagggtaccaaggacccacagcagcaagtcacccctcagcctggaaccaagacttcaag 626

                                                                       
Query: 427 gtctgtgtccaaagaagtactttactctcttttgggtccctgggcccccacccggccaag 486
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 627 gtctgtgtccaaagaagtactttactctcttttgggtccctgggcccccacctggccaag 686

                                                                       
Query: 487 cagagtatgaaggtgaaggcactgggttggaagaaggaagcaaaccagggtaccctgtgt 546
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 cagagtatgaaggtgaaggcactgggttggaagaaggaagcaaaccagggtaccctgtgt 746

                            
Query: 547 catcctggctacccact 563
           |||||||||||||||||
Sbjct: 747 catcctggctacccact 763


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space:   527009
Effective search space used:   527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no471_m15.g1 MSMg01no471_m15.g1 CHROMAT_FILE:
MSMg01no471_m15.g1 PHD_FILE: MSMg01no471_m15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:10 2005
         (592 letters)



>mm_chr2_179806491_179807482
          Length = 992

 Score =  735 bits (380), Expect = 0.0
 Identities = 389/392 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacggtgctaccgtgtgagagggccactgctgctatacaggatgctaagctcccggctac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 cacggtgctaccgtgtgagagggccactgctgctatacaggatgctaagctcccggctac 333

                                                                       
Query: 61  tgtccacaagaggtatgtccaggaaccttccgcactggtttcacagtgaaccaattgatc 120
           |||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct: 332 tgtccacaagaggtgtgtccaggaaccttccgcactagtttcacagtgaaccgattgatc 273

                                                                       
Query: 121 tgattgtgtagctggcactagagacatgtgccaagatgtcttcaatgagaaagaagaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tgattgtgtagctggcactagagacatgtgccaagatgtcttcaatgagaaagaagaaag 213

                                                                       
Query: 181 cactgtggaagaggggtgtagctcagttggtagaatgcctaccgacctagcatgcacaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 cactgtggaagaggggtgtagctcagttggtagaatgcctaccgacctagcatgcacaaa 153

                                                                       
Query: 241 gccctggggttgacccctggaatcacataatccaggcatgccaccacttactcaggaggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 gccctggggttgacccctggaatcacataatccaggcatgccaccacttactcaggaggt 93

                                                                       
Query: 301 ggaggtaggaaggtcagaagttcaaggtcatcttctactacttagcaagttcaaggccag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  ggaggtaggaaggtcagaagttcaaggtcatcttctactacttagcaagttcaaggccag 33

                                           
Query: 361 ccagggagccagacacatgcaaacctgtctta 392
           ||||||||||||||||||||||||||||||||
Sbjct: 32  ccagggagccagacacatgcaaacctgtctta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space:   571524
Effective search space used:   571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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