Query= MSMg01no472_c03.b1 MSMg01no472_c03.b1 CHROMAT_FILE:
MSMg01no472_c03.b1 PHD_FILE: MSMg01no472_c03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:39 2005
(387 letters)
>mm_chr2_170028605_170029391
Length = 787
Score = 675 bits (349), Expect = 0.0
Identities = 373/381 (97%), Gaps = 2/381 (0%)
Strand = Plus / Minus
Query: 4 ggaattcccgatctttccgtcagggtaacctggtgaggtgaccaacaatcccagtttgct 63
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 ggaattcccgatcaatcagtcagggtaacctggtgaggtgaccaacaatcccagtttgct 668
Query: 64 gagaacttggggtttccctaggtggagggaatttcagtgctaaaaccagggaagtcccaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 gagaacttggggtttccctaggtggagggaatttcagtgctaaaaccagggaagtcccaa 608
Query: 124 gctgaccagaaccaggtggtcaccgtgtcacttcaagatgcaactagaagcctcagatcc 183
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 607 gctgaccagaaccaggtggtcaccgtgtcacttcaagacgcaactagaagcctcagatcc 548
Query: 184 ccttctgctacagacttgctcatagccccagctgatctccggtcattcttcttactaggc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 ccttctgctacagacttgctcatagccccagctgatctccggtcattcttcttactaggc 488
Query: 244 tgagccagagtcacatcgtagcaccctgtcctctcaatatatactaattaattagtacag 303
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 487 tgagccagagtcacatcgtagcaccctgtcctctaaatatatactaattaattagtacag 428
Query: 304 atcaatataataacatgtttgttaccatatattaacatat-agattctgtgggttttgtt 362
||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||
Sbjct: 427 atcaatataataacatgttagttaccatatattaacatatga-attctgtgggttttgtt 369
Query: 363 ttgttgtggtttgggggtttg 383
|||||||||||||||||||||
Sbjct: 368 ttgttgtggtttgggggtttg 348
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 787
Length adjustment: 9
Effective length of query: 378
Effective length of database: 778
Effective search space: 294084
Effective search space used: 294084
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no472_c03.g1 MSMg01no472_c03.g1 CHROMAT_FILE:
MSMg01no472_c03.g1 PHD_FILE: MSMg01no472_c03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:40 2005
(483 letters)
>mm_chr2_169862587_169863469
Length = 883
Score = 911 bits (471), Expect = 0.0
Identities = 480/483 (99%)
Strand = Plus / Plus
Query: 1 aattatttttattcttcaaagctaatttaaaatttaagggatgccattacatgaaataat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattatttttattcttcaaagctaatttaaaatttaagggatgccattacatgaaataat 260
Query: 61 agggaagaaatgtaatcgcaatctctgggaacagttggtcgtccttagaatttaaaaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agggaagaaatgtaatcgcaatctctgggaacagttggtcgtccttagaatttaaaaaaa 320
Query: 121 aaaaaatgtgatcgctgacgatttggaaatgtttcttcatctgtgaacagatgagggatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaaaatgtgatcgctgacgatttggaaatgtttcttcatctgtgaacagatgagggatt 380
Query: 181 gaagtctctgctcttttcagtatatttaatttaaacggagaagagagttgacggtggcgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaagtctctgctcttttcagtatatttaatttaaacggagaagagagttgacggtggcgg 440
Query: 241 actccctgtgctgggagatcattgggcataattgccaaggcagctgaggggggcggggca 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actccccgtgctgggagatcattgggcataattgccaaggcagctgaggggggcggggca 500
Query: 301 gcctgggagactcacgtggcgttctccttgatgggaaccaagtctttctgaaatgccagg 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 gcctgggagactcacgtggcgttctccttgatgggaaccaagtcttcctgaaatgccagg 560
Query: 361 gcttcttgaatttgccatcttgttcctcacacagactgttagaggtttcactgtcccctt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcttcttgaatttgccatcttgttcctcacacagactgttagaggtttcactgtcccctt 620
Query: 421 ctctcgtaggcagtgcggtttcttccttctttcacgcactcattcattcactcactcaag 480
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctcttgtaggcagtgcggtttcttccttctttcacgcactcattcattcactcactcaag 680
Query: 481 cat 483
|||
Sbjct: 681 cat 683
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space: 412929
Effective search space used: 412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
