Query= MSMg01no472_e08.b1 MSMg01no472_e08.b1 CHROMAT_FILE:
MSMg01no472_e08.b1 PHD_FILE: MSMg01no472_e08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:51 2005
(521 letters)
>mm_chr2_30177737_30178657
Length = 921
Score = 984 bits (509), Expect = 0.0
Identities = 515/517 (99%)
Strand = Plus / Minus
Query: 5 gaattcaagactagcctggtctacatagcaagttccaggccagccagagctacatggtga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 gaattcaagactagcctggtctacatagcaagttccaggccagccagagctacatggtga 737
Query: 65 agccctatcttcaaaccagaattaacccctgtgaagcagcagtgtgtcaaggagagcagc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 agccctatcttcaaaccagaattaacccctgtgaagcagcagtgtgtcaaggagagcagc 677
Query: 125 tctatgccccttctccatctcatcctccccaaccctcaagtccatgaagactgaaggttc 184
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 tctgtgccccttctccatctcatcctccccaaccctcaagtccatgaagactgaaggttc 617
Query: 185 tttaaaatgaataaaggcaggctggacaagaccaggaatgggtcatagcaaggagtaagg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tttaaaatgaataaaggcaggctggacaagaccaggaatgggtcatagcaaggagtaagg 557
Query: 245 tctacccactcagggcctggctcacctaatcatctgagtcatgttggagacagggtgggc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tctacccactcagggcctggctcacctaatcatctgagtcatgttggagacagggtgggc 497
Query: 305 cacgaatggcaaaaaacctgtgtgacgaagatcagtccagacctaagaaggaagaagaag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 cacgaatggcaaaaaacctgtgtgacgaagatcagtccagacctaagaaggaagaagaag 437
Query: 365 gcttttggtgtgcacgtcctcccaggtgatcacaccgaatgtgatgctactgagctgcta 424
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 436 gcttttggtgtgcacgtcctcccaggtgattacaccgaatgtgatgctactgagctgcta 377
Query: 425 cagagacttgtcacctcacctttgctgggtttcgagcagccaagacagttaagcagttga 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 cagagacttgtcacctcacctttgctgggtttcgagcagccaagacagttaagcagttga 317
Query: 485 cacaagaagcaatgacgtttacaggaggggagatcac 521
|||||||||||||||||||||||||||||||||||||
Sbjct: 316 cacaagaagcaatgacgtttacaggaggggagatcac 280
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space: 465521
Effective search space used: 465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no472_e08.g1 MSMg01no472_e08.g1 CHROMAT_FILE:
MSMg01no472_e08.g1 PHD_FILE: MSMg01no472_e08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:51 2005
(487 letters)
>mm_chr2_30120669_30121557
Length = 889
Score = 903 bits (467), Expect = 0.0
Identities = 483/489 (98%), Gaps = 2/489 (0%)
Strand = Plus / Plus
Query: 1 agtctggaactggttagcttctgaggaaaaaaaggagatgtgggaacaccacccaccctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtctggaactggttagcttctgaggaaaaaaaggagatgtgggaacaccacccaccctc 260
Query: 61 cccctgaggccagcagagtgaatagaacagaggccccttagcctgcccatccacccaggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccctgaggccagcagagtgaatagaacagaggccccttagcctgcccatccacccaggc 320
Query: 121 ctcaccaccctacctaaaaccacagtgtgggcctaatccctaccttcaagaacaacttag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcaccaccctacctaaaaccacagtgtgggcctaatccctaccttcaagaacaacttag 380
Query: 181 aaaatttggagaaactgaagaaataagttttatttccacccactcatgctcaccctgtag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaatttggagaaactgaagaaataagttttatttccacccactcatgctcaccctgtag 440
Query: 241 cattgggtgaagcagttggaaggcacttcctagatgctaatcccaggcttcttatcagca 300
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 cattgggtgaagcagtgggaaggcacttcctagatgctaatcccaggctgcttatcagca 500
Query: 301 gtgagtagtacttgctgttcaccctggcctgttagacacccactgcagagaaagtaaagg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgagtagtacttgctgttcaccctggcctgttagacacccactgcagagaaagtaaagg 560
Query: 361 accacctgtctggctgagcctcccccccccc--ttgtttggtgaggtccccaggccattg 418
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 561 accacctgtctggctgagcctcccccccccccctggtttggtgaggtccccaggccattg 620
Query: 419 ctggctcagcagcgggggccttctctgctctttgttcctggaacttggtagagtatctgt 478
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 621 ctggctcagcagcgggggccttctctgctctttgttcctggaacttggtagagtgtctgt 680
Query: 479 ttttgctca 487
|||||||||
Sbjct: 681 ttttgctca 689
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 889
Length adjustment: 10
Effective length of query: 477
Effective length of database: 879
Effective search space: 419283
Effective search space used: 419283
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
