BAC Information

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BAC

Clone NameMSMg01-472I05
Chromosome2 (Build37)
Map Location 59,155,623 - 59,355,450
singlet/doubletdoublet
Overlap genePkp4, LOC625354, 2310032F03Rik
Upstream geneAcvr1c, LOC667062, Acvr1, LOC674940, Upp2, BC062650
Downstream geneLOC100038999, LOC100039016, Tanc1, Wdsub1, Baz2b, LOC667103, LOC667106, Ldha-ps, LOC100039092, March7, Cd302, LOC625861, Ly75, LOC100039176, Pla2r1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472I05.T7 (MSMg01no472_i05.b1)MSMg01-472I05.TJ (MSMg01no472_i05.g1)
ACCAG555029AG555030
length743761
length of high quality
(start - end)
528 (49 - 576)482 (79 - 560)
definitionCHROMAT_FILE: MSMg01no472_i05.b1 PHD_FILE: MSMg01no472_i05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:10 2005CHROMAT_FILE: MSMg01no472_i05.g1 PHD_FILE: MSMg01no472_i05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,155,623 - 59,156,146)(59,355,234 - 59,355,450)
sequence
CCTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCATTATTTTCCTTAAAGTTTAATGGCAGCCCTAGTGGGAGTCT
ACATATTTGTTATTATGTGAACTATTTTCTTCATGTAAAATAGGCATGTT
GGCAAAAATCCTAAACAGTAGGCTGGTCAGATGACATCATAAAATTGTGA
CAGTGTGATGCTACCAGAAAAGAAAGTATAAAATAATCTATATCAAGGGT
AAATGTATGTTCATATCATTATACAACAACATGGTAGAGATGATGCACAG
ATGCTACCCAGCCATTCTTTATCTATGACCAGCTCCCTGGTCTCTCATAT
GCACATATCATATGGAATCAGGGAGTAAGAAAGATATCACAGCTGGGAGA
GAGTCTGACACAGAAACTGTGTTCCTGTCTCTACACATTCTAGAAAATAT
AAAGGTCAGGAAGGTTCAGAGGTGGTGTTCCCTGGACATAGCATTTCTGA
CAATTTCCTTTTTTCTTTTTCACACTCCTCTGTGTTTCTGTCTCATGATC
ACAGCAACTATGATTATTAAGGTTTCTGAACAATCACCATGATTTCCCAC
CATATCTGTGGGAACAGCTTTGTCCTTTCCATCAGGCTTTTCTGTCCTCG
GGGGCGATATCTCACTCAACTAAATCCACCTTGTGCACCTGTAAATTGCA
TCTACTGTATTTCTTAATAAAAAGGCCGCATATTTTTTGTCTG
CTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCCAGTGGCCTCTGGAAGGC
ACTACTCCTGCTGAAATGCTGATAGCCTGACCGTAGCTCAGTAAGACTGG
TTTTAGACTTTTGACTTCCAGAACTCTGGGAGAATACATCTGCAGACACT
AAGCTTGCAGTCACTTATCACAGCTGCAGTAGGAAGTGAACAGCACGCTC
ACATTTCTGTCTTTCAGACAAGAATTCCGCTCATCAGAGCCGAACGCACA
GCTGCTTGGTCTCAGAGTCAGTGAGACCCAAACAGAGCTCACCGCCATCG
CCTTTTCTCTTTACATGTTTCTGTGCTTTATTTAATGGAACCACCATCTT
CTCGTGTCTCACAAGTGAGAACCAGGGTGTTCCTGGGCCCCTCTAATCTA
CACGCAGTAGTCATGACGTCTCAGTTGTTGACTGCCTAATGCTTCTCCAA
CATGCCTCTGACTGTGTTGTCCCCGTGGCTCTTTTCTTGCAGGTTAATTC
TTTTATCAAGTTCTCTACATCCAAGCCTACCGGAACCTTCTAGAAGGCAA
AGGTTATCAAGATTCCTCCTGAAGACACTGGCCAGAGAAAGTCCTAGCTC
CAGGGCGGGCCCTTCTAAAGGCGACAATCCACCTGGAACGAGGTTTTTGT
TTGGATCATTGGAGGCCCAAACCTACTTTTGGGGAACCCTCCGTGCCTTG
TTATAGGCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_i05.b1 MSMg01no472_i05.b1 CHROMAT_FILE:
MSMg01no472_i05.b1 PHD_FILE: MSMg01no472_i05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:10 2005
         (528 letters)



>mm_chr2_59155419_59156346
          Length = 928

 Score =  982 bits (508), Expect = 0.0
 Identities = 520/524 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattattttccttaaagtttaatggcagccctagtgggagtctacatatttgtta 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattattttcattaaagtttaatggcagccctagtgggagtctacatatttgtta 264

                                                                       
Query: 65  ttatgtgaactattttcttcatgtaaaataggcatgttggcaaaaatcctaaacagtagg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttatgtgaactattttcttcatgtaaaataggcatgttggcaaaaatcctaaacagtagg 324

                                                                       
Query: 125 ctggtcagatgacatcataaaattgtgacagtgtgatgctaccagaaaagaaagtataaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctggtcagatgacatcataaaattgtgacagtgtgatgctaccagaaaagaaagtataaa 384

                                                                       
Query: 185 ataatctatatcaagggtaaatgtatgttcatatcattatacaacaacatggtagagatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ataatctatatcaagggtaaatgtatgttcatatcattatacaacaacatggtagagatg 444

                                                                       
Query: 245 atgcacagatgctacccagccattctttatctatgaccagctccctggtctctcatatgc 304
           |||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||
Sbjct: 445 atgcacagatgctacccagccattcactagctatgaccagctccctggtctctcatatgc 504

                                                                       
Query: 305 acatatcatatggaatcagggagtaagaaagatatcacagctgggagagagtctgacaca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 acatatcatatggaatcagggagtaagaaagatatcacagctgggagagagtctgacaca 564

                                                                       
Query: 365 gaaactgtgttcctgtctctacacattctagaaaatataaaggtcaggaaggttcagagg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gaaactgtgttcctgtctctacacattctagaaaatataaaggtcaggaaggttcagagg 624

                                                                       
Query: 425 tggtgttccctggacatagcatttctgacaatttccttttttctttttcacactcctctg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tggtgttccctggacatagcatttctgacaatttccttttttctttttcacactcctctg 684

                                                       
Query: 485 tgtttctgtctcatgatcacagcaactatgattattaaggtttc 528
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgtttctgtctcatgatcacagcaactatgattattaaggtttc 728


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space:   475524
Effective search space used:   475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no472_i05.g1 MSMg01no472_i05.g1 CHROMAT_FILE:
MSMg01no472_i05.g1 PHD_FILE: MSMg01no472_i05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:10 2005
         (482 letters)



>mm_chr2_59354775_59355656
          Length = 882

 Score =  389 bits (201), Expect = e-112
 Identities = 213/217 (98%)
 Strand = Plus / Minus

                                                                       
Query: 260 ctcaccgccatcgccttttctctttacatgtttctgtgctttatttaatggaaccaccat 319
           |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 676 ctcaccgccatctccttttctctttacatgtttctgtgctttatttagtggaaccaccat 617

                                                                       
Query: 320 cttctcgtgtctcacaagtgagaaccagggtgttcctgggcccctctaatctacacgcag 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 cttctcgtgtctcacaagtgagaaccagggtgttcctgggcccctctaatctacacgcag 557

                                                                       
Query: 380 tagtcatgacgtctcagttgttgactgcctaatgcttctccaacatgcctctgactgtgt 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tagtcatgacgtctcagttgttgactgcctaatgcttctccaacatgcctctgactgtgt 497

                                                
Query: 440 tgtccccgtggctcttttcttgcaggttaattctttt 476
           ||||||| || ||||||||||||||||||||||||||
Sbjct: 496 tgtccccatgactcttttcttgcaggttaattctttt 460


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space:   411584
Effective search space used:   411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)