BAC Information

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BAC

Clone NameMSMg01-472K17
Chromosome2 (Build37)
Map Location 63,349,406 - 63,545,380
singlet/doubletdoublet
Overlap geneEG667257
Upstream geneFap, Ifih1, Gca, Kcnh7
Downstream geneFign, LOC620544
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472K17.T7 (MSMg01no472_k17.b1)MSMg01-472K17.TJ (MSMg01no472_k17.g1)
ACCAG555148AG555149
length750764
length of high quality
(start - end)		448 (71 - 518)480 (79 - 558)
definitionCHROMAT_FILE: MSMg01no472_k17.b1 PHD_FILE: MSMg01no472_k17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:23 2005CHROMAT_FILE: MSMg01no472_k17.g1 PHD_FILE: MSMg01no472_k17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,349,406 - 63,349,853)(63,544,901 - 63,545,380)
sequence
NNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGTCATTTGCTCTCCGACCTCTCTCCTTAAATCCCTGTTTGGT
TTTCCTTTGTTTACTCATTTTTATGATGTTCTTTACAACAACTGTAATGA
TGTTCAGTGTTTTATTATTAGGCTCTTGGATTCTGCTCACTTCCTAATTG
ATATCCCCACTATGGCTATAACAGCATATTGCTCAGAGCAGAGAGGCAGT
ATTAGTTGAGTGAAGAAATAAATGAAATGCATTTGATACTATTTTGAGGA
CAACTAATCTCTACCATTTAAGAAATGCCAAAGCAATGATCTATCATATT
AACTAGATTTTAAAGGTTCTACCAAGGAAGACGTTTTTCATAAAATATAG
TTGTAATTTTGGGGGTGGAAGGAAGTATGGGAAAACTATAGAACATAATC
AGAAAAAGTAGGTTTAACTCCAGGCTTAATTTCTATAAACTCTTGGGCAA
CTGATCAAATTTCTCTGGGCTCTAGGTTCTTTTAATGAAATAATGGTATA
TTATCCACCTTACCATGGTTTATTGAGAAATTCCCGTACCATTTTTAATG
TGTTTCGCACCTTGAATTTGTTCTGTTACCCCACAATTGTTTTTTTTTTT
CTCCACCCCTTTTTATTCCCAACCTTCCTCTTCTGATCTCTTTTTTTTCC
TCTTTTCTTTTTTTTTACCAACCCTTTTTCCATCTCTTTTTTTTTCTTTG


NCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGTGGGCTTTGCAAACAAGTG
AGTAAAGAGAGTGAAAAAATCAGAGATGCGAAATGATGACAGGAAGTCTG
GCTTATTTGTAGATAGATAAGTGCAACCGTAAGAACTTTGAAGGGCATTT
AAGCAGGTCTGGAAGGGAACAAGCACAGTGAGTATGTAAAAGAGAGGGAC
ATCTTCATTTAAAACACAGGATAAGCTGTGAGGTACAAAAGTATCCAGGA
GATGTGGGACAGATGATGAAATTGATCCGTAAGTAGTTTGTCATATCAAA
TGTGGTGAGCAGGCACAGAATTCAAGGATCTAAAGAAACCCAGTCTATCT
AGCAACCCAAAAGTAATCTGTAACTGCTAACTTCAATAGCAGGGAAGAAT
AAATAATGTCAGTATAATAGAACTGTTTGGCCAATTAGAGAAGGCCTTCC
TAGAGGTTGCTACTGTATACTCAAGTATTTACTATTCATCCCCCTTTCTA
GCTCACAGCATACAAATAATANAGATTATTGACTGACTGCTGGGCTGAAC
TGGTCACTTACCTTGAGACAGTAAATTACCTTTAATTTGTGCCGGGGGGC
CCCTTATATATCTTAAACATATTACCTCCCCCAAAATTTCTCCGAAAATG
TATTAACTGGCCAATGGGGGGTGGTCGAATGTATATTGTCCTCCCCTCCG
GTCTTAAAACCGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_k17.b1 MSMg01no472_k17.b1 CHROMAT_FILE:
MSMg01no472_k17.b1 PHD_FILE: MSMg01no472_k17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:23 2005
         (448 letters)



>mm_chr2_63349206_63350053
          Length = 848

 Score =  835 bits (432), Expect = 0.0
 Identities = 444/448 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccgacctctctccttaaatccctgtttggttttcctttgtttactcatttttatgatgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccgacctctctccttaaatccctgtttggttttcctttgtttactcatttttatgatgtt 260

                                                                       
Query: 61  ctttacaacaactgtaatgatgttcagtgttttattattaggctcttggattctgctcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttacaacaactgtaatgatgttcagtgttttattattaggctcttggattctgctcac 320

                                                                       
Query: 121 ttcctaattgatatccccactatggctataacagcatattgctcagagcagagaggcagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcctaattgatatccccactatggctataacagcatattgctcagagcagagaggcagt 380

                                                                       
Query: 181 attagttgagtgaagaaataaatgaaatgcatttgatactattttgaggacaactaatct 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actagttgagtgaagaaataaatgaaatgcatttgatactattttgaggacaactaatct 440

                                                                       
Query: 241 ctaccatttaagaaatgccaaagcaatgatctatcatattaactagattttaaaggttct 300
           ||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctaccagcaaagaaatgccaaagcaatgatctatcatattaactagattttaaaggttct 500

                                                                       
Query: 301 accaaggaagacgtttttcataaaatatagttgtaattttgggggtggaaggaagtatgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 accaaggaagacgtttttcataaaatatagttgtaattttgggggtggaaggaagtatgg 560

                                                                       
Query: 361 gaaaactatagaacataatcagaaaaagtaggtttaactccaggcttaatttctataaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaaaactatagaacataatcagaaaaagtaggtttaactccaggcttaatttctataaac 620

                                       
Query: 421 tcttgggcaactgatcaaatttctctgg 448
           ||||||||||||||||||||||||||||
Sbjct: 621 tcttgggcaactgatcaaatttctctgg 648


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space:   367044
Effective search space used:   367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no472_k17.g1 MSMg01no472_k17.g1 CHROMAT_FILE:
MSMg01no472_k17.g1 PHD_FILE: MSMg01no472_k17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:23 2005
         (480 letters)



>mm_chr2_63544701_63545580
          Length = 880

 Score =  920 bits (476), Expect = 0.0
 Identities = 479/480 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggtgggctttgcaaacaagtgagtaaagagagtgaaaaaatcagagatgcgaaatgatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aggtgggctttgcaaacaagtgagtaaagagagtgaaaaaatcagagatgcgaaatgatg 621

                                                                       
Query: 61  acaggaagtctggcttatttgtagatagataagtgcaaccgtaagaactttgaagggcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 acaggaagtctggcttatttgtagatagataagtgcaaccgtaagaactttgaagggcat 561

                                                                       
Query: 121 ttaagcaggtctggaagggaacaagcacagtgagtatgtaaaagagagggacatcttcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ttaagcaggtctggaagggaacaagcacagtgagtatgtaaaagagagggacatcttcat 501

                                                                       
Query: 181 ttaaaacacaggataagctgtgaggtacaaaagtatccaggagatgtgggacagatgatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttaaaacacaggataagctgtgaggtacaaaagtatccaggagatgtgggacagatgatg 441

                                                                       
Query: 241 aaattgatccgtaagtagtttgtcatatcaaatgtggtgagcaggcacagaattcaagga 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aaattgaaccgtaagtagtttgtcatatcaaatgtggtgagcaggcacagaattcaagga 381

                                                                       
Query: 301 tctaaagaaacccagtctatctagcaacccaaaagtaatctgtaactgctaacttcaata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tctaaagaaacccagtctatctagcaacccaaaagtaatctgtaactgctaacttcaata 321

                                                                       
Query: 361 gcagggaagaataaataatgtcagtataatagaactgtttggccaattagagaaggcctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gcagggaagaataaataatgtcagtataatagaactgtttggccaattagagaaggcctt 261

                                                                       
Query: 421 cctagaggttgctactgtatactcaagtatttactattcatccccctttctagctcacag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 cctagaggttgctactgtatactcaagtatttactattcatccccctttctagctcacag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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