BAC Information

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BAC

Clone NameMSMg01-472M02
Chromosome2 (Build37)
Map Location 153,963,270 - 153,963,742
singlet/doubletsinglet
Overlap gene1700058C13Rik
Upstream geneHck, Tm9sf4, Tspyl3, Plagl2, Pofut1, Kif3b, 2500004C02Rik, Asxl1, 8430427H17Rik, Commd7, 7530422B04Rik, Dnmt3b, LOC668932, Mapre1, EG329541, LOC100043869, Spag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477, Psp, LOC100043652
Downstream genePlunc, 2310021H06Rik, U46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1, Cbfa2t2, Apba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b, LOC668936, LOC435692, Raly, Eif2s2, a, Ahcy, Itch, LOC100043877
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472M02.T7 (MSMg01no472_m02.b1)MSMg01-472M02.TJ (MSMg01no472_m02.g1)
ACCAG555214AG555215
length782755
length of high quality
(start - end)
265 (54 - 318)473 (77 - 549)
definitionCHROMAT_FILE: MSMg01no472_m02.b1 PHD_FILE: MSMg01no472_m02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:29 2005CHROMAT_FILE: MSMg01no472_m02.g1 PHD_FILE: MSMg01no472_m02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGTC
GGATTCTCTGGTTACCTCCATACTTCATTTTTTTAACTGGGTTATTTGTT
TCTTTTGGAGTCTAACTTCTTGAGTTCTCGGTATATTTTGAATATTAGTC
CTCTTTCTCTATTTCTAAAGTAGCTATTTTCTACTTTCTCTTCTATTAGG
TTTAATGTCGAGGTCCCTGATTGACTTGGACTTGAGTTTTGTGCAGGGTG
ATAAATATGGACCTATGGGTATTCTTCTGCCTGCAGACAACCAGTTAGAT
CAGCACCATTTATTGAATATATTTTCTTTTTTCTATTGGATGGTTTTGGC
TTCTTTGTCTAAACAAAACAAAACAAAACCCCAAGTGTCCATAGGTGTGA
GGGTTTATTTCTGGGTTTTTGATTCTAGTCCATTGATTAAGCTGTCAGTT
TCTGTACCAATACCATGCAGTTTGTTTGTTTTTTTGGTCTTTCTTTGAAT
CATTATTGCTCTGCGGCACAGCTTGAGGTCCCGCATGGTGCTTTCCCTTT
GAAACTCTTTCATTGTCTTCCATTATCTTGCGCTTTCTTTGGTTTTTTTG
TGTTGCTATTTCGTATATGGGTCTTTCTCTCCGTCAATACTCTATTTTAT
CATTACTCCATCTTTATTCTTGTTCTCCTCCTTTAGTACGAATCTGATTC
CGCCCGCCTCTCGGTCTTCTCTTTTTTTTTTTGTACGCAGGCTTTTTCTC
CTTTTCTTCCTGTCTTTCTCTCTTCTCCCCCG
CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTTATCCCTGGCTGACACTCT
TGTCTGTGCTGGGGGCCTAGGTCTGTCCTCTGATTGGTGAGATCCTCCGG
CAGCTGGATGTGAAGCTGCTGAAAGGCCTAGTAGGTGAGTGTTGATGTCT
ATCCCAGGAGATCGCCTTGGAACTGGTAGCTACTGAGGGAGGAACCACAG
CTTTCATGTGCTGTGAGAACAAATGATAAGTACTCTATTGCAATGCTCAC
CCACCATGTGAGTGGGGAGAATATAAGGGACTGTAGTCAACTAGACTGTA
CCCTACCAAGTCACCAGACTGGAGATTCTAGCTTCCCCCAAGAGTTCTGC
ACATCCAGTAGGGTGGACATTCCCCTGTCTAAACTCAAGACAACCCCTGC
TTCAGGGACGGTTGAACTTCTCCAGCCCCCCTGCCCTGGTGGATCTCACA
GTCTTGGAAATAGAGGACAGGAAGTCATTTGTCAAGGGACATCTTTCTGA
ACAAGTGATGGGAAGAGAATGTTCCTGGCTCCCGCCCTTGGAGGATAGAT
GGGGAAGCACACCCTTCTCTGTGAACTTGGGGATTAAAAGGATCGCCTAG
TTTCCCTGACATCCTTTTTTCCTTCATACCAGGTGCCTGCTCCTAATCTG
GCGTTACCCCTGAATCAATCATATCTCTCTGCGCCCCACCTCAGGACTCC
TCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_m02.g1 MSMg01no472_m02.g1 CHROMAT_FILE:
MSMg01no472_m02.g1 PHD_FILE: MSMg01no472_m02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:30 2005
         (473 letters)



>mm_chr2_153963070_153963942
          Length = 873

 Score =  899 bits (465), Expect = 0.0
 Identities = 471/473 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttcttatccctggctgacactcttgtctgtgctgggggcctaggtctgtcctctgattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttcttatccctggctgacactcttgtctgtgctgggggcctaggtctgtcctctgattg 260

                                                                       
Query: 61  gtgagatcctccggcagctggatgtgaagctgctgaaaggcctagtaggtgagtgttgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgagatcctccggcagctggatgtgaagctgctgaaaggcctagtaggtgagtgttgat 320

                                                                       
Query: 121 gtctatcccaggagatcgccttggaactggtagctactgagggaggaaccacagctttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtctatcccaggagatcgccttggaactggtagctactgagggaggaaccacagctttca 380

                                                                       
Query: 181 tgtgctgtgagaacaaatgataagtactctattgcaatgctcacccaccatgtgagtggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtgctgtgagaacaaatgataagtactctattgcaatgctcacccaccatgtgagtggg 440

                                                                       
Query: 241 gagaatataagggactgtagtcaactagactgtaccctaccaagtcaccagactggagat 300
           ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 gagaatagaagggactgtagtcaactagattgtaccctaccaagtcaccagactggagat 500

                                                                       
Query: 301 tctagcttcccccaagagttctgcacatccagtagggtggacattcccctgtctaaactc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctagcttcccccaagagttctgcacatccagtagggtggacattcccctgtctaaactc 560

                                                                       
Query: 361 aagacaacccctgcttcagggacggttgaacttctccagcccccctgccctggtggatct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagacaacccctgcttcagggacggttgaacttctccagcccccctgccctggtggatct 620

                                                                
Query: 421 cacagtcttggaaatagaggacaggaagtcatttgtcaagggacatctttctg 473
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cacagtcttggaaatagaggacaggaagtcatttgtcaagggacatctttctg 673


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space:   399569
Effective search space used:   399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)