BAC Information

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BAC

Clone NameMSMg01-473F07
Chromosome2 (Build37)
Map Location 171,366,215 - 171,366,529
singlet/doubletsinglet
Overlap genenone
Upstream gene4930470P17Rik, Dok5, LOC668955, LOC100043743
Downstream geneLOC100043744, Cbln4, Mc3r, 2010011I20Rik, Aurka, Cstf1, F730031O20Rik, 2410001C21Rik, A330041C17Rik, 1700029J11Rik, LOC629957
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-473F07.T7 (MSMg01no473_f07.b1)MSMg01-473F07.TJ (MSMg01no473_f07.g1)
ACCAG555655AG555656
length764777
length of high quality
(start - end)		615 (42 - 656)533 (73 - 605)
definitionCHROMAT_FILE: MSMg01no473_f07.b1 PHD_FILE: MSMg01no473_f07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:22 2005CHROMAT_FILE: MSMg01no473_f07.g1 PHD_FILE: MSMg01no473_f07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:22 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCGAGGATCCGCGGA
ATTCATTGTTTTTTCCAGCTGAGTAGTATTCCATTGTGTAAATGTACCAC
ATTTTCTGTAACTATTCTTCTGTTGAAGGACATCTGGGTTGCTTACATCT
TCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCT
TTTTACCTGTTGGAGCATCTTCTGGGTATATGCCCAGGAGTAGTATTGCT
GGATCTTCTGGTAGTACTATGTCCAAATTTCTAAGGAACTGCCAGAGTGA
TTTCCAGAGTGGTTGTACCAGCTTGTAACCCCACCAGCAATGGAGGAGTG
TCCCTCTTTCTCCACATCCTTGCCAGCATCTGCTGTCACCTGAGTTTTTG
ATCTTAGCCTTTCTGACTGGTGTGAGGTAAAATCTCAGGGTTGTATTGAT
TTGCATTCCTTCACATAAATTGGCAGGATTAATATAGTAAAAGTGGCTAT
CTTGCCAAAAGCAATGTACAGATTCATTGCAATCCCCATCAAAATTCCAA
ATCAATTCTTCATAGAGTTAGAAAGAACAATTTCCAAATTCACCTGGAAT
AACAAAATACCCAGGATAGCAAAAACTATTCTCAACAATAAAAGAATTTC
TGGTGGAATCACCATTCCTGACTTCAAACTGTACTACAGAACAATTGTGA
TAAAAAACTGCATGGTACTGGTACAGTGACAGACAGGTATATCCATGGAA
TAGAAATGAAGACT

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAAATAAAGAGAAAGGGAAGTCACAACAA
ATAATTACAAATTAATTATTCTTTATTTGACAGCCAACTCTTACAGAAAG
CATTTCCCCACAGCCAGAAGGCAAAGCAAATGAGAATAAAAAGTGAACCC
AGCAGAGAGGAAATACTGAGGAAGTGAAACATGCAGAGAAGTACATCTTC
AGAGAACGTATTAGACCCCTGTCCTCCTTCCCCCTCTTCCTCTCTCCCTC
CCTCCTTCCCTCCTACCCATCTCTCCCTCCTTTTCCATCCCTACTTTCCT
ATTTCCCTCTGTCCCTCTCTTCTTCTCTCCCCCCTTCCATTGCCATGATG
TAACAAGAACAACTAGGCCTGGCTGGTGTAGGTTGATGGCCTAAGAACTA
GACAGAGCATGTGAATCTGCGACGTTGGGATTGGAAGAGGTTAAGGATAA
CCTCCATGTTGCAAACAGTCACTTTTCACAAACAGCACAACTCACCAGCT
GTCCACAGTCTGATCACTATATTTACTCAGAGATTTTCTCTTTTTCCTGC
TCAGAATACCCTGTATTTCTGTCATTGCCTGTGTCTGTGTTGTCAAACTC
TTCTAATTTCACAGTCATTTTCATAACCCATANGATAGCGTGTGCTGTTC
CAACTAATGATCTCTCACCATTTGAAGTGCTTAATCCAGAAGATTGTGCG
GTCTTTGTCAGCGTTTCAACCTCAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no473_f07.g1 MSMg01no473_f07.g1 CHROMAT_FILE:
MSMg01no473_f07.g1 PHD_FILE: MSMg01no473_f07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:22 2005
         (533 letters)



>mm_chr2_171366130_171367062
          Length = 933

 Score =  580 bits (300), Expect = e-170
 Identities = 312/316 (98%), Gaps = 1/316 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaataaagagaaagggaagtcacaacaaataattacaaattaattattctttatttgaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 aaataaagagaaagggaagtcacaacaaataattacaaattaattattctttatttgaca 341

                                                                       
Query: 61  gccaactcttacagaaagcatttccccacagccagaaggcaaagcaaatgagaataaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 gccaactcttacagaaagcatttccccacagccagaaggcaaagcaaatgagaataaaaa 281

                                                                       
Query: 121 gtgaacccagcagagaggaaatactgaggaagtgaaacatgcagagaagtacatcttcag 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 280 gtgaacccagcagagaggaaatactgaggaagtgaaacatgccgagaagtacatcttcag 221

                                                                       
Query: 181 agaacgtattagacccctgtcctccttccccctcttcctctctccctccctccttccctc 240
           |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 220 agaacgtattagacccctgtcctccttccccc-cttcctccctccctccctccttccctc 162

                                                                       
Query: 241 ctacccatctctccctccttttccatccctactttcctatttccctctgtccctctcttc 300
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 ctccccatctctccctccttttccatccctactttcctatttccctctgtccctctcttc 102

                           
Query: 301 ttctctccccccttcc 316
           ||||||||||||||||
Sbjct: 101 ttctctccccccttcc 86


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space:   482729
Effective search space used:   482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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