BAC Information

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BAC

Clone NameMSMg01-473G13
Chromosome2 (Build37)
Map Location 146,276,504 - 146,276,748
singlet/doubletsinglet
Overlap geneA230067G21Rik
Upstream geneSlc24a3, LOC627312, OTTMUSG00000015643, LOC433482, LOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563, Insm1
Downstream geneLOC668918, Gm114, Xrn2, Nkx2-4, Nkx2-2, LOC100043816, LOC668919, LOC668920, Pax1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-473G13.T7 (MSMg01no473_g13.b1)MSMg01-473G13.TJ (MSMg01no473_g13.g1)
ACCAG555715AG555716
length768769
length of high quality
(start - end)
394 (74 - 467)245 (78 - 322)
definitionCHROMAT_FILE: MSMg01no473_g13.b1 PHD_FILE: MSMg01no473_g13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:28 2005CHROMAT_FILE: MSMg01no473_g13.g1 PHD_FILE: MSMg01no473_g13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGTTTTGCCATGAGCCCCATTTTTTTCCATTTTTTATTAGGT
ATTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATACCCA
CCCACCCCCACTCCCCTACCCACCCACTCCCCCTTTTTGGCCCTGGCGTT
CCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTC
CAGTGATGGCTGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAA
GAGCTTCGGGGTACTGGTTATTTTTTTTGTTGTTCCACCTATAGGGTTGC
AGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGAGCC
CTGTGATCCATCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTA
GGCCCGGCATAGTCTCACAAGAGACAGCTACATCTGGGTCCTTTCGATAA
AATCTTGCTAGTATATGCAATGGTGTCAGCGTTTGGATGCTGATTATGGG
GTGGATCCCTGGATATGGTAGTCTCTACCTGGTCAATCCTTTCCTCTCAG
CTCCAATCTTTGCCTTTGTAACTCCCTCCATGTTTGCTTCGTCCCCAATC
CTACTTGTTTTTTTTATTGTCTCCATTTCTATTCTCCCTCGCCCCTTGTT
TTATCACGCGTATTACCATACTTGATTCTTTATACTTGCTCCCTCTTTAG
TCCTATCTTCTCATTATN
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGGGGAAGGTGTACTTCTCACAA
GTGTTCTGTGCCAGCTGATGAAATTTAAACCTGCTTTCCCAAACCACTGT
TGCTCTCACCACTGTTGCTTTAGGAGGCCATTCATCTTACTTTGCCAGCT
GTGTTTTTCCATGTAGTATATCTGAAAGGACAGTAGTGGCCTCATTGGAC
TATTTGTGTTCTGTGAATGAGAACTTAATGTGTAACACTTCTTTGCACTG
GATTCAGGCTGACCGAAACAGACTTTGAAGGGAAAAGAATGGTCCAGAGA
GAGAAGCCTCTGTGGACCTCTGTCCTGGGCCCTACGTCCTGTACATACTG
CCTTGGGGTTCAGTCTGAGAAGTTTCAGTGGCTGCATAGATGTGTTGTAA
TAAAGGCCATTTTAAAACCTTATTTAAAATTCAGCTGTAGTGAATACACT
CTCATTATTTTCTACCTTTCAGCAAAAATATACCCAGAGGAAATCACCCC
ACTTCTGCCAGCCATATCAGGGGAGAAGATTGCTGAGGACCAAACCTGCT
TTTTTCTTCAAATACTGTTGAAATACATGGTTATTCAGGTCAGAAAAATC
ATACCTGTTTCCCTGATGTGCTCATTTTCATAGGAAGGAAAGGTACTGCC
CTCCTTCCTTCTTGAAGGGTGTATGGGTTTCCTTGAGGCATTTTTATGAA
TGAATTATTAACCACACGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no473_g13.g1 MSMg01no473_g13.g1 CHROMAT_FILE:
MSMg01no473_g13.g1 PHD_FILE: MSMg01no473_g13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:28 2005
         (245 letters)



>mm_chr2_146276304_146276948
          Length = 645

 Score =  474 bits (245), Expect = e-138
 Identities = 245/245 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggggaaggtgtacttctcacaagtgttctgtgccagctgatgaaatttaaacctgcttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aggggaaggtgtacttctcacaagtgttctgtgccagctgatgaaatttaaacctgcttt 386

                                                                       
Query: 61  cccaaaccactgttgctctcaccactgttgctttaggaggccattcatcttactttgcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cccaaaccactgttgctctcaccactgttgctttaggaggccattcatcttactttgcca 326

                                                                       
Query: 121 gctgtgtttttccatgtagtatatctgaaaggacagtagtggcctcattggactatttgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gctgtgtttttccatgtagtatatctgaaaggacagtagtggcctcattggactatttgt 266

                                                                       
Query: 181 gttctgtgaatgagaacttaatgtgtaacacttctttgcactggattcaggctgaccgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gttctgtgaatgagaacttaatgtgtaacacttctttgcactggattcaggctgaccgaa 206

                
Query: 241 acaga 245
           |||||
Sbjct: 205 acaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)