BAC Information

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BAC

Clone NameMSMg01-473H10
Chromosome2 (Build37)
Map Location 37,056,265 - 37,056,510
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040493, Ptgs1, Olfr334-ps1, Olfr335, Olfr336-ps1, Olfr337-ps1, Olfr338, LOC675440, Olfr339, Olfr340, Olfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345, Olfr346, Olfr347, Olfr348, Olfr50, Rpl18p, Olfr3, Olfr349-ps1, Olfr350, Olfr351, Olfr352, Olfr353, Olfr354, Olfr355, Olfr356, Olfr357, Olfr358, Olfr359-ps1, Olfr360, Olfr361, Olfr362, Olfr364-ps1
Downstream geneOlfr365, Olfr366, Olfr367, Olfr368, Pdcl, Rc3h2, Zbtb6, Zbtb26, Rabgap1, Gpr21, 6430510M02Rik, Strbp, LOC639491, Dennd1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-473H10.T7 (MSMg01no473_h10.b1)MSMg01-473H10.TJ (MSMg01no473_h10.g1)
ACCAG555757AG555758
length761766
length of high quality
(start - end)
246 (72 - 317)558 (72 - 629)
definitionCHROMAT_FILE: MSMg01no473_h10.b1 PHD_FILE: MSMg01no473_h10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:33 2005CHROMAT_FILE: MSMg01no473_h10.g1 PHD_FILE: MSMg01no473_h10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTGTAGATTTCCCGAACATTAATGGGTTCTGATGTTCATTCACCTACA
TTCCCTGCTATGACCACCATCTCCAAAACTATGGCAAGAACACCATGAAT
GGGAGGGCCTCACTGATGAAGATCTTTTGTAAGAAAATAAACTGCTTCAA
GGGAAGTACAACTTCTTACTTTAAAAAGAAAATGAGGAGGCTAAGGACTT
GGTCAAGAAACCACTTGAGACAAATGTACAGAAATGAAAATAGCTCGGGT
AAATTAGGTAATACAGACATTTCTAACCTGGAGCGAGAGACCTTCAGTTT
GTAGTTAAGTAAATAACAGAGGTGTCACTTTGTATTTAATTGTTAGATAT
TCATCTAATGTATTTCTCTGTCAATTCTTAGAAATTATGTTTCAAACTCA
TGACAAATGGTGATAAGGGTTTTTTAAACAGACTTGGAGTTAGGGAAGAA
GTTATTCAGATGAAAATTCCTCTCACATCGTTCCTACAACTTCTCCAAAA
TTTATCCTGAGACAGAGACATGAACAACCACAGCAGCAGCAGCAGCACCT
CAGACTTCATCTTGCTGGGTCTCTCTACCAATCCCTGGATGCTAATACCC
CTTTTTGGCATCTTCATCATAATGTACCTGGCCCCAGCGATGGTGAATGT
GCTCATCATCCTGTTCATCCGCTCTGACTCCAGCCTCCATACCCTATGTT
CTTCCTTCCCN
AATGATGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCTCCTGTGAAGTGGTCCACAAATGGAGT
CAGTAAGTAGTCGGTTACCTCCATCCATAACAGTCTTGCTCTCCAGGTCA
TCAGTGTAGCTAGCTTGCAGGGTCCATAGCTTAATAAGACTACTGATAAC
TTTTATTCCCTAGCAAAGTACAGTTAAAATAGATTTTCTAAAAATAAAAC
TTCTATTTTTCACAGGAAAGAAAAATACAAACAGAATCTTGACTTTCAAG
AACAGCATTCTAGAGTAAAAGATATAGGCATGTAATGGGGAAAGTACTAG
AATGTATAGCTAACGTCACATGGGTATTTTAAAGGATAAGAATGAAGATG
AGAGCAATGAAGGAAGAAGGATTTATTTTGCGTCATAGTCTGAGGGGATA
CAGTCCATTATAGTGAGAAGGCATGGCATCAGGTAGCTCTATTGGTAATA
GCATGTGGCAGCTGATTGTCACATAGCACTAATCAAAGACCTGAGCTAGG
TCTGGGACTAGCTACCCCATAGTCTTACGGAGCTACATCTACCAGGTAAT
CCTATGTCATAAGGTCCCTCAACTTCTCANAATAGTGCTACCAGCTGGGA
ACCATGTATTCAGACTCGAGCCTGTGGGGGCCATTTTTACATTTCAAACT
ATAACATTTCACCCCTCCCATAAGCATATGGCCATCCATTTATTCTTTCA
TAACTGGGGAATATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no473_h10.b1 MSMg01no473_h10.b1 CHROMAT_FILE:
MSMg01no473_h10.b1 PHD_FILE: MSMg01no473_h10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:33 2005
         (246 letters)



>mm_chr2_37056065_37056710
          Length = 646

 Score =  453 bits (234), Expect = e-132
 Identities = 243/246 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   taatgggttctgatgttcattcacctacattccctgctatgaccaccatctccaaaacta 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taatgggttctgatgctcattcacctacattccctgctatgaccaccatctccaaaacta 260

                                                                       
Query: 61  tggcaagaacaccatgaatgggagggcctcactgatgaagatcttttgtaagaaaataaa 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggcaagaagaccatgaatgggagggcctcactgatgaagatcttttgtaagaaaataaa 320

                                                                       
Query: 121 ctgcttcaagggaagtacaacttcttactttaaaaagaaaatgaggaggctaaggacttg 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 ctgcttcaagggaagtacaacttcttactttgaaaagaaaatgaggaggctaaggacttg 380

                                                                       
Query: 181 gtcaagaaaccacttgagacaaatgtacagaaatgaaaatagctcgggtaaattaggtaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcaagaaaccacttgagacaaatgtacagaaatgaaaatagctcgggtaaattaggtaa 440

                 
Query: 241 tacaga 246
           ||||||
Sbjct: 441 tacaga 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)