Query= MSMg01no473_i18.b1 MSMg01no473_i18.b1 CHROMAT_FILE:
MSMg01no473_i18.b1 PHD_FILE: MSMg01no473_i18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:40 2005
(516 letters)
>mm_chr2_77087831_77088746
Length = 916
Score = 957 bits (495), Expect = 0.0
Identities = 513/523 (98%), Gaps = 7/523 (1%)
Strand = Plus / Plus
Query: 1 tcaataagtgccatcaacgggcagccattagagggcagcagagcatgccctgagcagcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcaataagtgccatcaacgggcagccattagagggcagcagagcatgccctgagcagcag 260
Query: 61 gacaggacaattacaagccttttaatcaaggctcggcaaattacacttcaaaagagatta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacaggacaattacaagccttttaatcaaggctcggcaaattacacttcaaaagagatta 320
Query: 121 taattgatggtatgtgtgggggtactggaactcttctttcaataaggataaatcaaccag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taattgatggtatgtgtgggggtactggaactcttctttcaataaggataaatcaaccag 380
Query: 181 tctgcttggaaaattcagttagattctttgaagagtgtttttttaacaaccagagaaaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgcttggaaaattcagttagattctttgaagagtgtttttttaacaaccagagaaaac 440
Query: 241 ccattaggatggcctgatgctaactaaatcatctctaataaatctacatcatgtagacac 300
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccattaggatggcctgaggctaactaaatcatctctaataaatctacatcatgtagacac 500
Query: 301 agaatggtggtgaacaaaagcagaacacaggctccgtagccttgtatctccaggaaaaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaatggtggtgaacaaaagcagaacacaggctccgtagccttgtatctccaggaaaaca 560
Query: 361 ctgaaacatagctctccttagaagcaagttaggaatagcttcaactattggttttgaaaa 420
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 561 ctgaaacatagctctccttagaagcaagttaggaatagcttcagctattggttttgaaaa 620
Query: 421 aaaatgaaaatctttgaaataaaaacaaaccccagcacaggaccactgct-------tcc 473
|||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 621 aaaatgaaaatctttgaaataaaaacaaaccccagcacaggaccactgctccctgcttcc 680
Query: 474 tgcctggctcaccacacccacgcacagaactgtgcctctcagc 516
|||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 681 tgcctggctcgccacacccacgcacagaactgtgcctctcagc 723
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space: 458436
Effective search space used: 458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no473_i18.g1 MSMg01no473_i18.g1 CHROMAT_FILE:
MSMg01no473_i18.g1 PHD_FILE: MSMg01no473_i18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:40 2005
(445 letters)
>mm_chr2_77282375_77283223
Length = 849
Score = 797 bits (412), Expect = 0.0
Identities = 439/450 (97%), Gaps = 6/450 (1%)
Strand = Plus / Minus
Query: 1 ttgcgcagctcttacctacagtgtttagttgtaatagaagaagctttatttttgagggga 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 ttgcgcggctcttacctacagtgtttagttgtaatagaagaagctttatttttgagggga 590
Query: 61 tgcttttttttt----aatttaaggggaaatttgaataatttgcctggggtaaatggtac 116
|||||||||||| ||||| | ||||||||||||||||| ||||||||||||||||||
Sbjct: 589 tgcttttttttttttaaatttga-gggaaatttgaataattcgcctggggtaaatggtac 531
Query: 117 atgagaaatgttcttaaagccccggtgtgaccactgtagactctccatgtgtagagacag 176
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 530 atgagaaatgttcttaaagccccggtgtgaccactgtagattctccatgtgtagagacag 471
Query: 177 ataatgctgactgggatgatgccaagcttggaaaggactctgccagcatagcatagacct 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 ataatgctgactgggatgatgccaagcttggaaaggactctgccagcatagcatagacct 411
Query: 237 ttccctg-cccccccccaacgcccccaaggctacatttgtttaccttcaaggcttggtaa 295
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 ttccctgccccccccccatcgcccccaaggctacatttgtttaccttcaaggcttggtaa 351
Query: 296 aaccttccattgaagacactggcagtggggactctggtttgcttcacgcccatgacctgt 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 aaccttccattgaagacactggcagtggggactctggtttgcttcacgcccatgacctgt 291
Query: 356 ggagactgagatgatgatgtagatctgagggcagagcaccccagtgcagcttgtcttagt 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 ggagactgagatgatgatgtagatctgagggcagagcaccccagtgcagcttgtcttagt 231
Query: 416 tgccggcatgtgatggttttgtgtggggac 445
||||||||||||||||||||||||||||||
Sbjct: 230 tgccggcatgtgatggttttgtgtggggac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 849
Length adjustment: 10
Effective length of query: 435
Effective length of database: 839
Effective search space: 364965
Effective search space used: 364965
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
