Query= MSMg01no473_m04.b1 MSMg01no473_m04.b1 CHROMAT_FILE:
MSMg01no473_m04.b1 PHD_FILE: MSMg01no473_m04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:58 2005
(574 letters)
>mm_chr2_83327901_83328873
Length = 973
Score = 1021 bits (528), Expect = 0.0
Identities = 561/572 (98%), Gaps = 2/572 (0%)
Strand = Plus / Plus
Query: 4 gaattctatcccta-tacccacatagaaagccaacatgatagcacatacttgtattcaca 62
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattctatccctagtacccacatagaaagccaacatgatagcacatacttgtattcaca 262
Query: 63 acactagggaggcagagataggtgaatgttgaggacttattagcccaccaccctagtcta 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 acactagggaggcagagataggtgaatgttgaggacttattagcccaccaccctagtcta 322
Query: 123 attggcaagccctgtctcaagaacatgacagacagcttctgcaaaatcgcacctgtggtt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 attggcaagccctgtctcaagaacatgacagacagcttctgcaaaatcgcacctgtggtt 382
Query: 183 gacctcatggccactctgtgcacaggagcacataaccatagaagaagtgcttcagaactt 242
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 383 gacctcatggccactctgtgcacaggagcacataaccataaaagaagtgcttcagaactt 442
Query: 243 gactctcacacacacagagcagctaatgtagagatttttattcctttcctctagttatta 302
|| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 443 gattctcacacacacagagcagctaatgtagagatcctaattcctttcctctagttatta 502
Query: 303 gcagagggcttaagtattatagaacaaattgtccctcctccacagaaagtatcttggcga 362
||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 503 gcagaggtcttaagtattatagaagaaattgtccctcctccacagaaagtatcttggcaa 562
Query: 363 aaattgtctgagtaatatgaaaaactaaatctcaggaaggaaaaaaaaagaggattaaga 422
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 563 aaattgtctgagtaatatgaaaaactaaatctcaggaaggaaaaaaaa-gaggattaaga 621
Query: 423 taagcgctgggttttcataacccaatcagaacagctgcgactagtgatcccctgttgata 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 taagcgctgggttttcataacccaatcagaacagctgcgactagtgatcccctgttgata 681
Query: 483 aatgataggaagcacaaatgttagcgaggagcctttcaagacactggcaccaacaactga 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 aatgataggaagcacaaatgttagcgaggagcctttcaagacactggcaccaacaactga 741
Query: 543 gttcattgaagaacattattcacctctgctca 574
|||||||||||||||||||||||||||||||
Sbjct: 742 attcattgaagaacattattcacctctgctca 773
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 973
Length adjustment: 10
Effective length of query: 564
Effective length of database: 963
Effective search space: 543132
Effective search space used: 543132
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no473_m04.g1 MSMg01no473_m04.g1 CHROMAT_FILE:
MSMg01no473_m04.g1 PHD_FILE: MSMg01no473_m04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:58 2005
(366 letters)
>mm_chr2_83515730_83516492
Length = 763
Score = 663 bits (343), Expect = 0.0
Identities = 357/363 (98%), Gaps = 3/363 (0%)
Strand = Plus / Minus
Query: 1 ctggtgtggtacaatgactggttgttttcagtccaagtctctggataagatttcaataac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctggtgtggtacaatgactggttgttttcagtccaagtctctggataagatttcaataac 501
Query: 61 gagagaaaagaaatggaaaaaaaaatctaggagattttggagaaaaaaagactttagtct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gagagaaaagaaatggaaaaaaaaatctaggagattttggagaaaaaaagactttagtct 441
Query: 121 ggaatttgacatactggcaggaaatacatgttactgagagcagcttattggaaatactcg 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 440 ggaatttgacatactggcaggaaatacatgttactgtgagcagcttattggaaatactcg 381
Query: 181 agagatagagccaccactcatgtggaagtgattacggcaatcacaagagcaagtgaggct 240
|||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 380 agagatagag---ccactcatgtggaagtgattatggcaatcacgagagcaagtgaggct 324
Query: 241 ggcaaaggacagaacacaaagatggcagagaagcctgaatcacagagaaaggctcggcag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ggcaaaggacagaacacaaagatggcagagaagcctgaatcacagagaaaggctcggcag 264
Query: 301 gaaacccctccctctgatgtgaagtatcaaacaaggttccaggcagttctgcaacagctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gaaacccctccctctgatgtgaagtatcaaacaaggttccaggcagttctgcaacagctt 204
Query: 361 tac 363
|||
Sbjct: 203 tac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 763
Length adjustment: 9
Effective length of query: 357
Effective length of database: 754
Effective search space: 269178
Effective search space used: 269178
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
