BAC Information

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BAC

Clone NameMSMg01-473N03
Chromosome2 (Build37)
Map Location 155,376,265 - 155,587,849
singlet/doubletdoublet
Overlap geneAcss2, Gss, Myh7b, Trpc4ap, Edem2, Procr
Upstream geneApba2bp, E2f1, Pxmp4, Zfp341, Chmp4b, LOC668936, LOC435692, Raly, Eif2s2, a, Ahcy, Itch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3
Downstream geneMmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik, Gdf5, Cep250, Ergic3, Fer1l4, Spag4, Cpne1, Rbm12, Nfs1, 2010100O12Rik, Rbm39, Phf20, Scand1, LOC632394, LOC628707, LOC669792, 2900097C17Rik, LOC668941, Epb4.1l1, 0610011L14Rik, Dlgap4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-473N03.T7 (MSMg01no473_n03.b1)MSMg01-473N03.TJ (MSMg01no473_n03.g1)
ACCAG556029AG556030
length765768
length of high quality
(start - end)		568 (46 - 613)548 (74 - 621)
definitionCHROMAT_FILE: MSMg01no473_n03.b1 PHD_FILE: MSMg01no473_n03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:03 2005CHROMAT_FILE: MSMg01no473_n03.g1 PHD_FILE: MSMg01no473_n03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,376,265 - 155,376,828)(155,587,364 - 155,587,849)
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCTTCCACTTCCCTTTTTGCTTCTTCATCATAATGCTGAGATATA
GGAACAATTCCAGGAAAGCTTCCTCTAATAGGGCTGGCTGAGAGCAGGGG
GTTTTGACCTTTAGTATGGGTAGAGAAGCCTTTGGGCTTTAGGAATTTAG
CCTGAAAAGCTGTGAAGGTTGACATGCACAGGGGACCTTAGGGTTTAGGC
TTGGGCTTGGGTTAGAAATGTGCTGACTTGGGTGACTGTATGTACTCATC
CTGATTGAATTATGACTTGAATGATTTATATTTGTGGCTTTGGACCCATT
ACTTCTGCTGAAAGCTATAGGAAAGTCCCGTTGACAGCTTACAGTTCTGA
GTGGCATAGATCTATCGATTCTGGGTGCAGAAGGATAGAGGATTACTTAG
ATTCTTTGATTTGGATTATCTGGGTAGTGTTGGGGCTAGAGAGGCTAGCT
AGTATAGGACTAGTGAGACTGGGGAGCCCAATCAATATTAGAAATTTTGT
ATAGAATACAGGTGAGAAAAATAGAGGCTGAGGGGACTAGTGAAAGGGTA
GGCTGGGGAGAAAGAAGGCAACTAGGGGGTTTAGGGAACACTCACCCTTC
CGTTTCACCTCTATCCTTGGACCCTGCTCATCAGNCTTTCCATTTCCAGG
GCTCTTGAACGGGTAAGCTGAGAGAGAATTCCATGGGCATCCGGACCCTG
GTTTTCACTTCCTTG

CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGTTTCTCAGAATTCCCCATTCTCTGG
ATGACAGCGTTACAGGATGAGCGAAGTCCCCCAAACTGATTCACTTGCAA
GTGAAATAAGAAATCAAGAGGCAGATTTAAGGAAATTAGGAAGTGAAAAA
TACGAAACTTTTGTTTTACAGAGAGGAACACACATGTTGAAAAATGAGAG
ATGAGAAAGTAAAGGGTTTTGCATTTCTGGGAAAGGGTTGCAAACTCATG
AAAGGAAAAAAAATAGAGCCACAGCAATGGAGGTAAGAACTGTAGAGAGT
GGAAGAGTACCAGCACTCAGGAGGCAGAGGTAGGTGATCACTGTGTGTTC
CAGGTAGAGTCCAGTCTTGTCTACATAATAAATTCCAAGCTGGCCAGTAG
CCAAGGTTACAAACTGTGACCCTGCCCCCCCCAAATAAATAAATAAATAA
ATAAAGGAAGTGTTTCACCAATTTGATAAAAATCTACTCCCTGCCATCTG
AGGACACTCCCTTCAGGTTCCCCAAGAAGAAAGATGGTCCTGCATCTGCA
AAGTCCATCTTTTATTTTGTTTTGGTTTGGTTTGTTTTTGAGACAGGGTC
TTTCTCTGTAGCCATGGCTGTCCTGGAACTGGCTTGGTACTCTAGGTTAG
CCTAAAACTCAGAGAGATCTGCCTGCTTCTGACTCCTAAGGGNTGGGATT
AAAAATGTGTGACCCCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no473_n03.b1 MSMg01no473_n03.b1 CHROMAT_FILE:
MSMg01no473_n03.b1 PHD_FILE: MSMg01no473_n03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:03 2005
         (568 letters)



>mm_chr2_155376061_155377028
          Length = 968

 Score = 1048 bits (542), Expect = 0.0
 Identities = 559/566 (98%), Gaps = 4/566 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcccttccac--ttccctttttgcttcttcatcataatgctgagatataggaacaa 62
           ||||||||||||||  |  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcccttccacact--cctttttgcttcttcatcataatgctgagatataggaacaa 262

                                                                       
Query: 63  ttccaggaaagcttcctctaatagggctggctgagagcagggggttttgacctttagtat 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ttccaggaaagcttcctctaatagggctggctgagagcagggggttttgacctttagtat 322

                                                                       
Query: 123 gggtagagaagcctttgggctttaggaatttagcctgaaaagctgtgaaggttgacatgc 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gggtagagaagcctttgggctttaggaatttagcctgaaaagctgtgaaggttgacatgc 382

                                                                       
Query: 183 acaggggaccttagggtttaggcttgggcttgggttagaaatgtgctgacttgggtgact 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 acaggggaccttagggtttaggcttgggcttgggttagaaatgtgctgacttgggtgact 442

                                                                       
Query: 243 gtatgtactcatcctgattgaattatgacttgaatgatttatatttgtggctttggaccc 302
           |||||||||||||||||||||||||||||||||||||  || ||||||||||||||||||
Sbjct: 443 gtatgtactcatcctgattgaattatgacttgaatgagctacatttgtggctttggaccc 502

                                                                       
Query: 303 attacttctgctgaaagctataggaaagtcccgttgacagcttacagttctgagtggcat 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 attacttctgctgaaagctataggaaagtcccgttgacagcttacagttctgagtggcat 562

                                                                       
Query: 363 agatctatcgattctgggtgcagaaggatagaggattacttagattctttgatttggatt 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 agatctatcgattctgggtgcagaaggatagaggattacttagattctttgatttggatt 622

                                                                       
Query: 423 atctgggtagtgttggggctagagaggctagctagtataggactagtgagactggggagc 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 atctgggtagtgttggggctagagaggctagctagtataggactagtgagactggggagc 682

                                                                       
Query: 483 ccaatcaatattagaaattttgtatagaatacaggtgagaaaaatagaggctgaggggac 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ccaatcaatattagaaattttgtatagaatacaggtgagaaaaatagaggctgaggggac 742

                                     
Query: 543 tagtgaaagggtaggctggggagaaa 568
           ||||||||||||||||||||||||||
Sbjct: 743 tagtgaaagggtaggctggggagaaa 768


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space:   534564
Effective search space used:   534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no473_n03.g1 MSMg01no473_n03.g1 CHROMAT_FILE:
MSMg01no473_n03.g1 PHD_FILE: MSMg01no473_n03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:03 2005
         (548 letters)



>mm_chr2_155587364_155588311
          Length = 948

 Score =  940 bits (486), Expect = 0.0
 Identities = 486/486 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtttctcagaattccccattctctggatgacagcgttacaggatgagcgaagtccccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tgtttctcagaattccccattctctggatgacagcgttacaggatgagcgaagtccccca 427

                                                                       
Query: 61  aactgattcacttgcaagtgaaataagaaatcaagaggcagatttaaggaaattaggaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 aactgattcacttgcaagtgaaataagaaatcaagaggcagatttaaggaaattaggaag 367

                                                                       
Query: 121 tgaaaaatacgaaacttttgttttacagagaggaacacacatgttgaaaaatgagagatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tgaaaaatacgaaacttttgttttacagagaggaacacacatgttgaaaaatgagagatg 307

                                                                       
Query: 181 agaaagtaaagggttttgcatttctgggaaagggttgcaaactcatgaaaggaaaaaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 agaaagtaaagggttttgcatttctgggaaagggttgcaaactcatgaaaggaaaaaaaa 247

                                                                       
Query: 241 tagagccacagcaatggaggtaagaactgtagagagtggaagagtaccagcactcaggag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tagagccacagcaatggaggtaagaactgtagagagtggaagagtaccagcactcaggag 187

                                                                       
Query: 301 gcagaggtaggtgatcactgtgtgttccaggtagagtccagtcttgtctacataataaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 gcagaggtaggtgatcactgtgtgttccaggtagagtccagtcttgtctacataataaat 127

                                                                       
Query: 361 tccaagctggccagtagccaaggttacaaactgtgaccctgccccccccaaataaataaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 tccaagctggccagtagccaaggttacaaactgtgaccctgccccccccaaataaataaa 67

                                                                       
Query: 421 taaataaataaaggaagtgtttcaccaatttgataaaaatctactccctgccatctgagg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66  taaataaataaaggaagtgtttcaccaatttgataaaaatctactccctgccatctgagg 7

                 
Query: 481 acactc 486
           ||||||
Sbjct: 6   acactc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space:   504644
Effective search space used:   504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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