BAC Information

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BAC

Clone NameMSMg01-473N19
Chromosome2 (Build37)
Map Location 124,186,675 - 124,378,026
singlet/doubletdoublet
Overlap genenone
Upstream gene4930517E11Rik, LOC100043360
Downstream geneSema6d, LOC100043367, LOC100043369, Slc24a5, Myef2, LOC100043375, Slc12a1, Dut, A530010F05Rik, LOC100043698, Fbn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-473N19.T7 (MSMg01no473_n19.b1)MSMg01-473N19.TJ (MSMg01no473_n19.g1)
ACCAG556061AG556062
length787732
length of high quality
(start - end)		109 (76 - 184)565 (81 - 645)
definitionCHROMAT_FILE: MSMg01no473_n19.b1 PHD_FILE: MSMg01no473_n19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:07 2005CHROMAT_FILE: MSMg01no473_n19.g1 PHD_FILE: MSMg01no473_n19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,377,918 - 124,378,026)(124,186,675 - 124,187,238)
sequence
NNNAAATCAAAATTTGCGGCGCTAAACGACTCACACATCANACAGATCCG
CGGAATTCTATCTCTTACATCACATAGTGCAGGGTTGTCTCATCTCAACC
AGTCACTATGCCCAAATACAAATTCTTGATTTCTTGTTACTAACTTTGAT
CATTTCAAATAATGAATTTGTTCTGTGAGCAATAGTCAAGGGGNANACCT
TTTCCTCTAGCTATGTNGCTTCACTTTGNGGATGGGNAGACGGTTTTTAG
CTTTTTTTTTTTTTTTANNNTTCATTGTGTAATACGGGGGNNCCATAAAA
ACAAANNATTGGNATTTNNCNNTTTTTTTTTTTTAGAAAAAGTTTNGAAA
AGAAAATTGGNATTAANAAACCTAACAAATTGCTGGGAATGGGGTGAAGA
GACCAGACAAAATAAAAAAAAAAAAAAAAGAAATAAATAAACCCCTTATT
AAAAAAAAGGGGGAAATTTTCAAAAAAAATCCCCCAAAAAAAGGAAAACT
GAAAAAAAAAAAATTGGGCCTTTTTTTTTTTTCCCCCCTCTTTTTTTTNT
AAAAAAAAAAAAAATTTCCCTCCCCCCAAAAACCGCCCCTTTTTTATATT
TCTCANCTACCCTATAATAAACTAAAAAATTCCCCCCCTTTATATTCTCC
CTGGGTTGTTGTCCCCCCTGATGGGGGGGNNAAANNNNNNNNNNNNNNNN
TCTTTTTNNNTTNTNNNTCCTCCTTCTACTNNNNNNNNNNNNTNNNNCNN
NNNNNNNNNNNNNNTTTNNNTCTCATCCTCTGTTGTG

ATTGTGCGAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTATGTATTTCAGCACCCC
ACTTTTTCGATCAATTGTTCTGAGACATCTTCAGTAGGTCAGGGTAAGTG
GTGGGGCATCAAAATGTTCTTGAGTCCTTGGTGTTTCTTTATGTAGAATT
TTGTTAAGCCAAGACAAAGAGGCTTGCTCAGGTTTACATTTGACAAATCT
TCACAGACTGCCATCAGATTAAAGACCTGTGCTGGATATTAGGATCGCAG
TGACAGATGCTGTTCCACACCTGCCCACACCCCATACATCTAAGCATTTA
GTCCTCGTAGACTGCTCCTTCATTTTCATTATTCTTAATATACTTATGAA
CTACTGTGCTCTGCTTGCTGTGATATGTACTAGAGATAAGCTAAGAAAGC
TATTTCATATGGCTTCCAATCATCTATCAATTTCTCCTTTTTTCTATACT
GTACTTTTCAAACCCAATCACTTCATGCTATGATTTTTTTTCTAAGTTGA
CATACCAAACATGGCAAGATTCTTTCATTCTTACATTTAAAATTATTTAC
AAGAAAATACTTTCTATGACAAGTAGATAAATGAAAGCATCTGAGTGCTG
TGGGGCCATAAGCCATGCGCATACAAATAGGATGGAAATCAGCCTGGAAT
CTTTTTAGGGGAACCTTGTTTCCGCTGATATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no473_n19.b1 MSMg01no473_n19.b1 CHROMAT_FILE:
MSMg01no473_n19.b1 PHD_FILE: MSMg01no473_n19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:07 2005
         (109 letters)



>mm_chr2_124377718_124378226
          Length = 509

 Score =  203 bits (105), Expect = 2e-57
 Identities = 108/109 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgcagggttgtctcatctcaaccagtcactatgcccaaatacaaattcttgatttctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 agtgcagggttgtctcatctcaaccagtcactatgcccaaatacaaattcttgatttctt 250

                                                            
Query: 61  gttactaactttgatcatttcaaataatgaatttgttctgtgagcaata 109
           |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 249 gttactaactttgatcatttcaaataatgagtttgttctgtgagcaata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 109
Length of database: 509
Length adjustment: 8
Effective length of query: 101
Effective length of database: 501
Effective search space:    50601
Effective search space used:    50601
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)

Query= MSMg01no473_n19.g1 MSMg01no473_n19.g1 CHROMAT_FILE:
MSMg01no473_n19.g1 PHD_FILE: MSMg01no473_n19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:07 2005
         (565 letters)



>mm_chr2_124186474_124187438
          Length = 965

 Score = 1091 bits (564), Expect = 0.0
 Identities = 564/564 (100%)
 Strand = Plus / Plus

                                                                       
Query: 2   ctatgtatttcagcaccccactttttcgatcaattgttctgagacatcttcagtaggtca 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ctatgtatttcagcaccccactttttcgatcaattgttctgagacatcttcagtaggtca 261

                                                                       
Query: 62  gggtaagtggtggggcatcaaaatgttcttgagtccttggtgtttctttatgtagaattt 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gggtaagtggtggggcatcaaaatgttcttgagtccttggtgtttctttatgtagaattt 321

                                                                       
Query: 122 tgttaagccaagacaaagaggcttgctcaggtttacatttgacaaatcttcacagactgc 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tgttaagccaagacaaagaggcttgctcaggtttacatttgacaaatcttcacagactgc 381

                                                                       
Query: 182 catcagattaaagacctgtgctggatattaggatcgcagtgacagatgctgttccacacc 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 catcagattaaagacctgtgctggatattaggatcgcagtgacagatgctgttccacacc 441

                                                                       
Query: 242 tgcccacaccccatacatctaagcatttagtcctcgtagactgctccttcattttcatta 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tgcccacaccccatacatctaagcatttagtcctcgtagactgctccttcattttcatta 501

                                                                       
Query: 302 ttcttaatatacttatgaactactgtgctctgcttgctgtgatatgtactagagataagc 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ttcttaatatacttatgaactactgtgctctgcttgctgtgatatgtactagagataagc 561

                                                                       
Query: 362 taagaaagctatttcatatggcttccaatcatctatcaatttctccttttttctatactg 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 taagaaagctatttcatatggcttccaatcatctatcaatttctccttttttctatactg 621

                                                                       
Query: 422 tacttttcaaacccaatcacttcatgctatgattttttttctaagttgacataccaaaca 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tacttttcaaacccaatcacttcatgctatgattttttttctaagttgacataccaaaca 681

                                                                       
Query: 482 tggcaagattctttcattcttacatttaaaattatttacaagaaaatactttctatgaca 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tggcaagattctttcattcttacatttaaaattatttacaagaaaatactttctatgaca 741

                                   
Query: 542 agtagataaatgaaagcatctgag 565
           ||||||||||||||||||||||||
Sbjct: 742 agtagataaatgaaagcatctgag 765


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space:   530025
Effective search space used:   530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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