Query= MSMg01no474_e18.b1 MSMg01no474_e18.b1 CHROMAT_FILE:
MSMg01no474_e18.b1 PHD_FILE: MSMg01no474_e18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:42 2005
(489 letters)
>mm_chr2_142397061_142397948
Length = 888
Score = 822 bits (425), Expect = 0.0
Identities = 469/489 (95%), Gaps = 10/489 (2%)
Strand = Plus / Minus
Query: 1 tcattaaggtttgggggcaagagtccatcttctgtaagtgccaacatactaggcttggcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tcattaaggtttgggggcaagagtccatcttctgtaagtgccaacatactaggcttggcc 445
Query: 61 acctgtcccaaatacaccaaagagatgaataattgtgagaagcagaaactctgactcttg 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 444 acctgtcccaaatacaccaaagagatgaataattgtgagaagcagaaactgtgactcttg 385
Query: 121 ggggtaatgagatgagttttagtttgaatacatgaagaatcgggaaagggggtaaaagaa 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggggtaatgagatgagttttggtttgaatacatgaagaatcgggaaagggggtaaaagaa 325
Query: 181 ttcataataaagaagttctgttattgtatttggcaatgtgagttataccaaagaggtcaa 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 324 ttcataataaagaagttctgttattgtatttggcaacgtgagttataccaaagaggtcaa 265
Query: 241 gttcagctctctctaactatagatgccaattacaacagccaaatcagtagtaaaaagtaa 300
||||||| | | | ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 264 gttcagc-cacccaaactatagacgccaattacaacagccaaatcagtagtaaaaagt-- 208
Query: 301 aaaaaaaaaaaaaacagtgatttctttaatgcagccacattggaagaaggaccaagagat 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 -------aaaaaaacagtgatttctttaatgcagccacattggaagaaggaccaagagat 155
Query: 361 ccagtctccctcctggctattttcagggtgctgaagtaagatcaaagtttaaatagaggg 420
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 ccagtctccctcatggctattttcagggtgctgaagtaagatcaaagtttaaatagaggg 95
Query: 421 acaagtagatggacacctaagctctgcagtccagctgtagtccactccccactgactgat 480
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 94 acaagtagatggacacctaagctgtgcagtccagctgtagtctactccccactgactgat 35
Query: 481 cattgtctg 489
|||||||||
Sbjct: 34 cattgtctg 26
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 888
Length adjustment: 10
Effective length of query: 479
Effective length of database: 878
Effective search space: 420562
Effective search space used: 420562
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no474_e18.g1 MSMg01no474_e18.g1 CHROMAT_FILE:
MSMg01no474_e18.g1 PHD_FILE: MSMg01no474_e18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:42 2005
(241 letters)
>mm_chr2_142217364_142218004
Length = 641
Score = 464 bits (240), Expect = e-135
Identities = 240/240 (100%)
Strand = Plus / Plus
Query: 1 tctggaaactgtaggaaaaggaaaacaatctttatatttaggaaacagaaaaggaggagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctggaaactgtaggaaaaggaaaacaatctttatatttaggaaacagaaaaggaggagt 260
Query: 61 tccactcctgaatttgcttaaacttccttttatgaattaaagtgcattttcatctttgct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccactcctgaatttgcttaaacttccttttatgaattaaagtgcattttcatctttgct 320
Query: 121 ttgcagtagatttttggttgctatgtggctgaatgattgtatgctttaaaataaataatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgcagtagatttttggttgctatgtggctgaatgattgtatgctttaaaataaataatg 380
Query: 181 cagttaatttacacttcaataatgaaatataaaaatgttagctctgggccagactgaagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagttaatttacacttcaataatgaaatataaaaatgttagctctgggccagactgaagg 440
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space: 146624
Effective search space used: 146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
