NNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCCATCGAGAACAACAAGAAAACAATACAAATCCATCAATA
TTAAAGACCAAATCTTAATTACAAATGAGTCGTAATTGGATTCAATTGCA
AATGGGATTTTTTTCACTCTCTCACAGTACAATTAAAACTTACAGATTTA
TTTCATCAGAAAATAAAATCAGCTGCTTAGTTCTAAAAATGTACTATAAC
AAGAGCAAGGGCATCTGATCTCTGCTTGTGTTATTTTTTGGTAGCAGAAT
ATTCTAAGAATTCAATACTTGGGTGTTAGTCAACTATTAGAGGGCTAAGT
GGTCTATAACATACGGCAGAATGAAAGACACATAGGGCCCCAAGTTTTAA
AATTCAGCTAACAGTGGCCCTTGCTATCTTCCTTTACTGTAAGCTCTCTG
CCAGTGATTGTTGAAGTTAAATTAAAAGTACCTTTTTGGGGGGGAGTGGG
GGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNTNNNNNNNTNNNNN

NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAGAAGGTGGACTCCAGAAAATCAA
ATAACCCCATTAAAAAATGGGGCTCAGAACTGAACAACGAATTCTCACCT
GAGAAATACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAGCATCCTT
AATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCATCTCACAC
CAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCAA
GGTTGTCGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCT
TGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTTAGAAAATTGGACA
TAGTACTACTGGAGGATCCAACAATACCTCTCCTGGGCATATATCCAGAA
GATGTCCCAACCAGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGC
CTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCATCAACAG
AGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTACTACTCA
GCTATTAAAAAGAATGAATTTATGAAATTCCTACCCCAATGAATGGACCT
GGAGGCATCCTCCCTGAGTGAGGGAACTCCTTCCCACAGGAACCCCCCCA
AAATGTTCCTCCCTGGGAAGGGGGATATTAACCCCAAAATTTAAGAACCC
CCCTAT

Query= MSMg01no474_m20.b1 MSMg01no474_m20.b1 CHROMAT_FILE:
MSMg01no474_m20.b1 PHD_FILE: MSMg01no474_m20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:23 2005
         (449 letters)



>mm_chr2_47851914_47852764
          Length = 851

 Score =  853 bits (441), Expect = 0.0
 Identities = 445/447 (99%), Gaps = 2/447 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctccatcgagaacaacaagaaaacaatacaaatccatcaatattaaagaccaaat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 gaattctccatcgagaacaacaagaaaacaatacaaatccatcaatattaaagaccaaat 592

                                                                       
Query: 65  cttaattacaaatgagtcgtaattggattcaattgcaaatgggatttttttcactctctc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 cttaattacaaatgagtcgtaattggattcaattgcaaatgggatttttttcactctctc 532

                                                                       
Query: 125 acagtacaattaaaacttacagatttatttcatcagaaaataaaatcagctgcttagttc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 acagtacaattaaaacttacagatttatttcatcagaaaataaaatcagctgcttagttc 472

                                                                       
Query: 185 taaaaatgtactataacaagagcaagggcatctgatctctgcttgtgttattttttggta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 taaaaatgtactataacaagagcaagggcatctgatctctgcttgtgttattttttggta 412

                                                                       
Query: 245 gcagaatattctaagaattcaatacttgggtgttagtcaactat--tagagggctaagtg 302
           ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 411 gcagaatattctaagaattcaatacttgggtgttagtcaactattctagagggctaagtg 352

                                                                       
Query: 303 gtctataacatacggcagaatgaaagacacatagggccccaagttttaaaattcagctaa 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 gtctataacatacggcagaatgaaagacacatagggccccaagttttaaaattcagctaa 292

                                                                       
Query: 363 cagtggcccttgctatcttcctttactgtaagctctctgccagtgattgttgaagttaaa 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 cagtggcccttgctatcttcctttactgtaagctctctgccagtgattgttgaagttaaa 232

                                      
Query: 423 ttaaaagtacctttttgggggggagtg 449
           |||||||||||||||||||||||||||
Sbjct: 231 ttaaaagtacctttttgggggggagtg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 851
Length adjustment: 10
Effective length of query: 439
Effective length of database: 841
Effective search space:   369199
Effective search space used:   369199
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)