Query= MSMg01no475_a08.b1 MSMg01no475_a08.b1 CHROMAT_FILE:
MSMg01no475_a08.b1 PHD_FILE: MSMg01no475_a08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:40 2005
(316 letters)
>mm_chr2_47922446_47923161
Length = 716
Score = 559 bits (289), Expect = e-164
Identities = 299/303 (98%), Gaps = 2/303 (0%)
Strand = Plus / Plus
Query: 1 gcaatttttgttgttgggcttgtgcacattttttagcagaactgatacattttgccattg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcaatttttgttgttgggcttgtgcacattttttagcagaactgatacattttgccattg 260
Query: 61 ctccaaaaatgtactggaccaacataaatttacccatttgttcctacaaatggcatttgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctccaaaaatgtactggaccaacataaatttacccatttgttcctacaaatggcatttgt 320
Query: 121 ttgcttgtttgtttgtttatttgtttgttcatcacctgaagagaacttcttttatactct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgcttgtttgtttgtttatttgtttgttcatcacctgaagagaacttcttttatactct 380
Query: 181 cttcttctcttgtagtatttttgttgaagaaatgtgctctgaaatgggagagcattatga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttcttctcttgtagtatttttgttgaagaaatgtgctctgaaatgggagagcattatga 440
Query: 241 atgccttgatttattttaaagatcacacacacacacacaca--aacacacacacacacac 298
||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 atgccttgattgatcttaaagatcacacacacacacacacacaaacacacacacacacac 500
Query: 299 aca 301
|||
Sbjct: 501 aca 503
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space: 217049
Effective search space used: 217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no475_a08.g1 MSMg01no475_a08.g1 CHROMAT_FILE:
MSMg01no475_a08.g1 PHD_FILE: MSMg01no475_a08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:40 2005
(417 letters)
>mm_chr2_48109670_48110486
Length = 817
Score = 717 bits (371), Expect = 0.0
Identities = 415/453 (91%), Gaps = 36/453 (7%)
Strand = Plus / Minus
Query: 1 tctgaactgaaacatagggaagattcaagatagtcctgagattagtcaagctttccagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 tctgaactgaaacatagggaagattcaagatagtcctgagattagtcaagctttccagaa 510
Query: 61 acagcaaagtagagttctggttgttctttgaaagcacagcctcattttgtgtgagtgctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 acagcaaagtagagttctggttgttctttgaaagcacagcctcattttgtgtgagtgctc 450
Query: 121 caaaatttgtagaccctacgcaacgttctcagtgaaccctcacaacaatctcacaaggaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 caaaatttgtagaccctacgcaacgttctcagtgaaccctcacaacaatctcacaaggaa 390
Query: 181 atgaaagattttaaaaatatgaagaggcttccatatctgatcaaataagtccaccagctt 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 389 atgaaagattttaaaaatatgaagaggcttccatatctgatcaaatatgtccaccagctt 330
Query: 241 agatgaaaacaaatttcatttctttaaaaaacaaattctgtatactgtgatctcctgtgc 300
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 329 agatgaaaacaaatttcatttctttaaaaaacaagttctgtatactgtgatctcctgtgc 270
Query: 301 aatgcccttcaatctttaaaagagcactgctttttaataagctctagtctaaggta---- 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 aatgcccttcaatctttaaaagagcactgctttttaataagctctagtctaaggtaatat 210
Query: 357 --------------------------------atatatatatatacacttccaggaattg 384
||||||||||||||||||||||||||||
Sbjct: 209 atatatatatatatatatatatatatatatatatatatatatatacacttccaggaattg 150
Query: 385 atcaatttacttcgggagcaacagaatagaagc 417
|||||||||||||||||||||||||||||||||
Sbjct: 149 atcaatttacttcgggagcaacagaatagaagc 117
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space: 329664
Effective search space used: 329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
