BAC Information

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BAC

Clone NameMSMg01-475A12
Chromosome2 (Build37)
Map Location 144,893,643 - 144,893,831
singlet/doubletsinglet
Overlap genenone
Upstream gene4930517K23Rik, LOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1, 1700010M22Rik
Downstream geneSlc24a3, LOC627312, OTTMUSG00000015643, LOC433482, LOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475A12.T7 (MSMg01no475_a12.b1)MSMg01-475A12.TJ (MSMg01no475_a12.g1)
ACCAG556953AG556954
length737810
length of high quality
(start - end)
194 (138 - 331)229 (75 - 303)
definitionCHROMAT_FILE: MSMg01no475_a12.b1 PHD_FILE: MSMg01no475_a12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:40 2005CHROMAT_FILE: MSMg01no475_a12.g1 PHD_FILE: MSMg01no475_a12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCCTCTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCCACAA
CAGCGCGGNAANCAGGGAAGTATCAAGACCATGCCATATTCAAAGCTCTT
TGTCAGAACTTACAAGAGAGTGAAGATCAGAACGTAGTAGTAAGAAGACA
CTGTCAAGATACCACCTGGCACATCTTGGGAGACTTTTGTACCATGGTCT
GATCACCTATTAGGTAAGGTCCAGCATGCAGAGTCAAAGAGGTTGTAGAT
GAGTGAGGTACTTTTCCACAGAAAAGGGGGATGAGGGAAAGATGGCTTCC
TAATCCACTGTCCTTTTTACCCTACCTATTGGTGGTTTGGTCTAAAAGAA
AACACAGCACATTGGTTCACTTTAAAATGTAAAGGAAACCAATTTTAATT
AACTTAATGAAATGTAAAAGCAAAACTTCAGAGATAACATGAGATGAGCT
CATTAACTTAAAAAATGGCTCATGGAAAGTATGGATATTTTGTTTTCATA
AGCATCATGGCAAAGGTTTGTCTCCATTGTCCCCGCCTTTGTTTCTCACC
ATGTTCACAGTGAATTTCTAAAGCTGTACTCTCAGTGTCCTTACCGCCTA
GATGCACTCTTTGTTCAGTGAATACCTTGTATTTTCTCAACCTGCAACAT
ATTTACTTGCCCAGTTTTTTTTTTAATTACCACCCCTTCCTGTTTACTTT
TGTGTGCTTTCACCACTTCCCCCCCCCCTTCTCTTGN
TTCCCCATGCATTGTTTAGCCTGGCGGNCGCCCGGTTCCACAACTTAGGT
GAACTATAGAAGTTTCGCGAAATTCACTTGGCTATTGACAACCAGGAGGT
AGTGGTGGCACTGGATATTTGCTTTGAAGAACCACTAATAAAGAAAGCAG
GGTGAAAACCCATGAGCTGTGTGTCTGTTTGTGTGTCTGTCTATCTATCT
ATCTATCTATTTATCTATCTATCTATCTATCTATCTATCTATCTATCTAT
CTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCCGTCC
GTCCGTCCGTCCGTTTTTTCTTTCGCCCCCTCGTTTCGCCCTCCCGTCTG
TCCCTTTCCCTATCCACCTACCTACCTATCCCCTTCATTTATCTATCCCC
TCCCCCTTTCTTCCCTCTCCCCCTATCCATCTACCCTTCTCCTTTTCTTT
TTTCCCCCCCTCCTTCGCCCTCCCTCCTTTTTTTTCCCCTCTCCTTCCTT
TTCCCTTCTTTTCCCCCCTTTATTCTCCCCCTTTTTTCTCCCCCCTCCCT
TTCCTTTTCTCTCTTCCCCCCCCCCCTTTCCTTTCTATACTTCCCCCCTT
TTTTTTTTTTTCCCCTCCCCCATTCTTTCCTCCTCTCCCCCCCCCTTCCT
TTTCTTCTTTTTTCCCTTTCCCTCCCCTCCCTTCTTTTCCCCTCCCTCCT
CCCTTTTCTCCCCCCCTCCTCCCCTCTTTTTCCCCTTTTCCCTTTTTTTT
TTCCTTCCCCTCTCTCCCTTTTTTTTTCCCCTTCCCTTTTTTTTCTCCCT
CCTCTCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_a12.b1 MSMg01no475_a12.b1 CHROMAT_FILE:
MSMg01no475_a12.b1 PHD_FILE: MSMg01no475_a12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:40 2005
         (194 letters)



>mm_chr2_144893441_144894034
          Length = 594

 Score =  288 bits (149), Expect = 1e-82
 Identities = 179/193 (92%), Gaps = 8/193 (4%)
 Strand = Plus / Minus

                                                                       
Query: 3   gtaagaagacactgtcaagataccacctggcacatcttgggagacttttgtaccatggtc 62
           ||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 391 gtaagaagacagtatcaagataccacctggcacatcttgggagacttttgtaccacggtc 332

                                                                       
Query: 63  tgatcacctattaggtaaggtccagcatgcagagtcaaagaggttgtagatgagtgaggt 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 331 tgatcacctattaggtaaggtccagcatgcagagtcaaagaggttgtagatgagtgaggc 272

                                                                       
Query: 123 ac----ttttccacagaaaagggggatgagggaaagatggcttcctaatccactgtcctt 178
           ||        |||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 271 acaaag----ccacagaaaagggggatgaggggaagatgtcttcctaatccactgtcctt 216

                        
Query: 179 tttaccctaccta 191
           |||||||||||||
Sbjct: 215 tttaccctaccta 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)