Query= MSMg01no475_b20.b1 MSMg01no475_b20.b1 CHROMAT_FILE:
MSMg01no475_b20.b1 PHD_FILE: MSMg01no475_b20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:47 2005
(481 letters)
>mm_chr2_21651869_21652745
Length = 877
Score = 828 bits (428), Expect = 0.0
Identities = 464/478 (97%), Gaps = 4/478 (0%)
Strand = Plus / Plus
Query: 4 gaattcactttcttctccgttagcgtttgaagatctatgctgtgtgaaagactcagttgt 63
||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcactttcttctctgtcagtgtttgaagatctatgctgtgtgaaagactcagttgt 263
Query: 64 taatgacaatgcagcatatatcaagaatgattctcatatgttggttataaaatgggtgct 123
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 taatgacaatgtagcacatatcaagaatgattctcatatgttggttataaaatgggtgct 323
Query: 124 ctcagtccctgtgggttactatgtgcttctgtaacactgcaccttcattaagttgctgag 183
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctcagtccctgtgggttattgtgtgcttctgtaacactgcaccttcattaagttgctgag 383
Query: 184 gaaagcaagaccaggctagctttggagctttgccctaggccatgcctcactggtcatgga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gaaagcaagaccaggctagctttggagctttgccctaggccatgcctcactggtcatgga 443
Query: 244 gcctagactgtcattcaccactggagttctttgttttatccaccacagtactctgtagct 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 444 gcctagactgtcattcaccactggagttctttgttttatccaccacagtactctgtagtt 503
Query: 304 ctgctcttccaacctgtgtatttgcagaactaggcaaatgaagttaaaaatacttcttgg 363
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 504 ctgctcttccaacctgtgtatttgcagaactaggcaagtgaagttaaaaatacttcttgg 563
Query: 364 tttgttaagcttcttctgattgattccttgaggtagttagcttgttgtgtgtattgtatt 423
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 564 tttgttaagcttcttctgatt----ccttgaggtagttagcttgttgtgtgtattgtatt 619
Query: 424 tttatttaatgataaaccaggcatataattgtgtcagcaatacaaacaatgctcttag 481
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 620 tttatttaatgataaaccaggcatataattgtgtcagcaatccaaacaatgctcttag 677
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 877
Length adjustment: 10
Effective length of query: 471
Effective length of database: 867
Effective search space: 408357
Effective search space used: 408357
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no475_b20.g1 MSMg01no475_b20.g1 CHROMAT_FILE:
MSMg01no475_b20.g1 PHD_FILE: MSMg01no475_b20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:47 2005
(209 letters)
>mm_chr2_21850358_21850966
Length = 609
Score = 381 bits (197), Expect = e-110
Identities = 206/209 (98%)
Strand = Plus / Minus
Query: 1 caaactgtttagtcttagggcctcctaagacagggaagcaggacgttcttggggttctac 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 409 caaactgtttagtcttagggcctcctaagacagggaagcaggacgttcttggggttctgc 350
Query: 61 aagacttctcaggattgaagagcaagagcagagttagacaatggagcttagaggatcaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 aagacttctcaggattgaagagcaagagcagagttagacaatggagcttagaggatcaag 290
Query: 121 cacaactcacctttgcaggctgtgtcctaggcagactcaattaggatggtgagaagatca 180
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 289 cacaactcacctttgcaggctgtgccctaggcagactcaattaggatggcgagaagatca 230
Query: 181 gactgggatggaattggtggggtagggtt 209
|||||||||||||||||||||||||||||
Sbjct: 229 gactgggatggaattggtggggtagggtt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 209
Length of database: 609
Length adjustment: 9
Effective length of query: 200
Effective length of database: 600
Effective search space: 120000
Effective search space used: 120000
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
