BAC Information

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BAC

Clone NameMSMg01-475C06
Chromosome2 (Build37)
Map Location 118,656,238 - 118,656,512
singlet/doubletsinglet
Overlap geneD2Ertd750e
Upstream geneThbs1, Fsip1, Gpr176, 1700054M17Rik, Eif2ak4, Srp14, LOC668859, Bmf, LOC640461, Bub1b, Pak6, Gm1337, Plcb2, LOC100043272, A430105I19Rik, Disp2
Downstream geneIvd, Bahd1, Chst14, LOC677379, Ccdc32, Rpusd2, Casc5, Rad51, 1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19, Ppp1r14d, Spint1, Rhov, Vps18, LOC100043609, Dll4, Chac1, Inoc1, LOC100043612, Exdl1, 1500003O03Rik, LOC100043307, Oip5, Nusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk, Rpap1, Tyro3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475C06.T7 (MSMg01no475_c06.b1)MSMg01-475C06.TJ (MSMg01no475_c06.g1)
ACCAG557037AG557038
length741772
length of high quality
(start - end)
240 (88 - 327)275 (82 - 356)
definitionCHROMAT_FILE: MSMg01no475_c06.b1 PHD_FILE: MSMg01no475_c06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:49 2005CHROMAT_FILE: MSMg01no475_c06.g1 PHD_FILE: MSMg01no475_c06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTCCCCTCTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XATCCGCGGAATTCTGGAGTTTGCCCTCTCTTAAAAAACAGAAACATTAT
AAGAACATGCTTTTGTTTTAATCCCATGTGTGGGATAAGGGGCTGCTTTG
GACTGTCCATACCAGCTGACCCTGATTTGCCTCATGCTCTAGCAGAAGTG
TGGTTTTGCCAGCTGCTATGAACAGACACCATGACCAAGGCAACTCTTAT
AAAAGAAAACATTTAATTGGGGCTGGCTTACAAGTTCAGAGGTTCAATCT
AGTATTATAGCAGGAAACATGGCAGGTTATTTTTTAGGCATGGNGCTGGT
AAAGGAGCTGAAAGTTCTACATCTCCATCTGAAGGAAGCCAAGAGGAAAA
TGTCCACCACAGGCAGCCAGAAGGAGGCTGCCTTCCACACTGGGTGAAGC
CTGAGCATAAAAGACCTCTAAGTCTTCACAGTGACACAAAAGACCTCTAA
GCCTTCACAGTGTCACACCTCCACCAACGAGGCCACACATACTCCAATAA
AGTCATACCTCTTAATAGTGACTCTCCCTACCTACGCCTAAGCATTGTAA
CTCTTGAACCTATGTAGGTCCTACCTATTTTTACCACTACCCCCTCATAG
CTGATACGATCATAACTGGGCCAGATATGCTCTCCCGTAAACCTCTGTTC
TTGACCTGATTCAGCCCTGACCTTCCTCGAATAAATGGTTG
TTCTCCCGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAACAGGCTTGGCATTATG
GAGTTCTCAGCAATGGAATAGGGAAAACATTTGGTGAAGTGCAGAAGAGG
GAAATCACACTCTCTATACAAGCTCTGCCCATCAAAAGTTTTTGTGTGTA
CACACACATGCATGCGTGGTGTGTGTGAAGTGCTGGCAGTCAACCTTAGA
TGTCAGGCATACTAGGTAAGCACTATACTCCTGAGTCATAGCCCCAGATT
TCTATTATATGGATTTCTCTCTCACCTCCACCCCCTGCCCTGTATGTGTG
TGTGTGTGCGTGATTGTACCTCCCGCGTCACACGCTCTTATATCTGCCCG
TTCCAATTCTTGCGTAGCCCCTTCCTCCTCCCCTTACCTCTTTTTTTTTT
TCCCCACTCTTTCCCAACCCTCTTTTTATCGCTCGTCCCTATCTCTTTTT
TTCCCCGATACTCCCACCATTTTCTTCCCTCATTTCTTTTTCTCCTTCCC
CCCCCCTTTCCTTCTTTCCTCCCCCTTTTTTTTTTTCCCTCCCCCCTTTT
TCCTTCTCCACCCCCCCTTTCTCTTTTTTTCTTACTTTCCCCCCCCCCTC
TTTTCCCCTTCCCCTTCCCTTTTTTCCCCCTCCCTTCCCGTTTTTTCCCC
CCTTCTCTATCTTTACCTCTCCCCCTTTCCCTTTTTTTTCTCTCCTTCCT
TTTTTTCTCCCCTCCCCCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_c06.g1 MSMg01no475_c06.g1 CHROMAT_FILE:
MSMg01no475_c06.g1 PHD_FILE: MSMg01no475_c06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:49 2005
         (275 letters)



>mm_chr2_118656038_118656712
          Length = 675

 Score =  532 bits (275), Expect = e-155
 Identities = 275/275 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaacaggcttggcattatggagttctcagcaatggaatagggaaaacatttggtgaagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 aaacaggcttggcattatggagttctcagcaatggaatagggaaaacatttggtgaagtg 416

                                                                       
Query: 61  cagaagagggaaatcacactctctatacaagctctgcccatcaaaagtttttgtgtgtac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 cagaagagggaaatcacactctctatacaagctctgcccatcaaaagtttttgtgtgtac 356

                                                                       
Query: 121 acacacatgcatgcgtggtgtgtgtgaagtgctggcagtcaaccttagatgtcaggcata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 acacacatgcatgcgtggtgtgtgtgaagtgctggcagtcaaccttagatgtcaggcata 296

                                                                       
Query: 181 ctaggtaagcactatactcctgagtcatagccccagatttctattatatggatttctctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 ctaggtaagcactatactcctgagtcatagccccagatttctattatatggatttctctc 236

                                              
Query: 241 tcacctccaccccctgccctgtatgtgtgtgtgtg 275
           |||||||||||||||||||||||||||||||||||
Sbjct: 235 tcacctccaccccctgccctgtatgtgtgtgtgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 675
Length adjustment: 9
Effective length of query: 266
Effective length of database: 666
Effective search space:   177156
Effective search space used:   177156
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)