Query= MSMg01no475_c19.b1 MSMg01no475_c19.b1 CHROMAT_FILE:
MSMg01no475_c19.b1 PHD_FILE: MSMg01no475_c19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:51 2005
(507 letters)
>mm_chr2_125900147_125901053
Length = 907
Score = 513 bits (265), Expect = e-149
Identities = 274/277 (98%)
Strand = Plus / Plus
Query: 1 agttagattccatggtagctacagctgaagacatcaaataaaaacacgaaacaggaaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttagattccatggtagctacagctgaagacatcaaataaaaacacgaaacaggaaaac 260
Query: 61 tgggaaattttgattttcatctcttttaaagaccttagcattatgatgcgagcatgaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggaaattttgattttcatctcttttaaagaccttagcattatgatgcgagcatgaaaa 320
Query: 121 atgattctgtgttagagagggaagtggggttaaagattccatataaggagtttctgagtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgattctgtgttagagagggaagtggggttaaagattccatataaggagtttctgagtg 380
Query: 181 aataaacattaaatcctttaaaattagaaatgccaacataattgtattttaaaaagtgag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aataaacattaaatcctttaaaattagaaatgccaacataattgtattttaaaaagtgag 440
Query: 241 atgatcccctgtattttttttggatcatgaatatttt 277
||||||||||| | ||||||||||||||||||||||
Sbjct: 441 atgatcccctgaaagttttttggatcatgaatatttt 477
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space: 445809
Effective search space used: 445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no475_c19.g1 MSMg01no475_c19.g1 CHROMAT_FILE:
MSMg01no475_c19.g1 PHD_FILE: MSMg01no475_c19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:52 2005
(401 letters)
>mm_chr2_126078111_126078911
Length = 801
Score = 661 bits (342), Expect = 0.0
Identities = 386/401 (96%), Gaps = 1/401 (0%)
Strand = Plus / Minus
Query: 1 attaagaaaataaccacagttatatagaaatgtggtcaaaacagacaaatcaaggcttga 60
|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 403 attaagaaaataaccacagttatatagaaatgtggttgaaacagaaaaatcaaggcttga 344
Query: 61 gagtggagttcggtgcagaccttgtatggatgaggctcagagtttgatcctaagtctaga 120
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 gagtcgagttcggtgtagaccttgtatggatgaggctcagagtttgatcctaagtctaga 284
Query: 121 cagggaatgatgacaagaagcttagggtttgggatgttgcttttcagcatcctgagactc 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 283 cagggaatgatgacaagaagcttagggtttgggatgttgcttttcagcatcctgggactc 224
Query: 181 tgaattcattacttgcatcaccaagatcttaagtactttttttattgttgagataagaca 240
||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||
Sbjct: 223 tgaattcattacttgcatcaccaggattttaagtactttttt-attgttgagataagaca 165
Query: 241 ccatgttttaggccacttgtaaaaggaaacatttaatttggcccttatggttttagagga 300
||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 ccatgagtaagaccacttgtaaaaggaaacatttaatttggcccttatggttttagagga 105
Query: 301 cttattgtggtttgaatgaaagtgacacccagaggctcataggaaggtgtggcctcattg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 cttattgtggtttgaatgaaagtgacacccagaggctcataggaaggtgtggcctcattg 45
Query: 361 gaggaagtgtgttgttggagttagctttggnatttcagaag 401
|||||||||||||||||||||||||||||| |||||||||
Sbjct: 44 gaggaagtgtgttgttggagttagctttggggtttcagaag 4
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 801
Length adjustment: 9
Effective length of query: 392
Effective length of database: 792
Effective search space: 310464
Effective search space used: 310464
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
