CTCTTTCCCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGA
AGATCCGCGGAATTCCACTTCATTACTTTGCCATGAATAATCGAAATGAT
ATAAGTAGATTGAAACAGTAGAGGAGGGATTAAATATTGATGTACATCTA
TGAGCTATTTAAAATTATGCTCATAATTATTGACAGATTTGTACAATCCT
GTTCATTTGTCTGTGTATACGTGTGTTTATGTGTGAGGGTGGTTATGCAT
ATGTGAAGGGCAGGTCAGCCTCAGGTTTCTTTCCTTAGGTGCAGTCTAAC
TTGGTTTGTTTGGCAGAGCCTCTTACTGATTTTTTTTTCACCCAGCAGAC
GAGGCTGGCAGTCCGGTACTTTTTCACACACACACACCTCATTCAGGATT
CATCCGTCTCAATACCCATGTTTGTTATTACAAGCATGCATCATCATCTC
TGTGATTTTAAACACATATTCCTGGTAATAATCCCTGTTCCTCTTCCTTG
TATATCTCACACTTTTGTCACTAATTCTCTTTTGTTCCCCCTTTATTCCT
ATCCCCCCTCCCGCTTTTTTTTTTCCTTTTCTTTCCTTTCCCCCCTCCCC
TTCGCCTTTTTTCCCCCCTTTTTCCCCCCCTTCTCTTTCCCCCTTCCTCC
TTCTTCTCCCCCCTCTTTTCCCCCTTGCCTTTTTTTTCTTCGTTTTTCCA
TTCCTCTTATTCTTCCTTTACCCATCCCCTCTTTTTCTCCCCTCAACTTT
CCCTCATCTCCATTCCTCT

CTTCCTTCTATGATCTGTNTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGTGCCCTGAGCACTAAG
AAAAGCACCTGGCATGCAGCAGTCAACGACACTTGCAGGATGCTCTCTTC
TACCGTCTGCTGTGGTCTGAAGCAATTCTGCGTGCACCTGCTGTTTCCTA
ACTCTGGGTTCATGCGTAGTTACTCAATACACTGAATACGTGTAAATTTT
GTGCTTAGTGGTTGTGGTCCACTGCAACCCCACGGCTCAGGACTGCAACC
CAAGGGGCCACGTGGTTAATAATGTGTGCTTCCAGTGACACTGTGAGTCA
TGGCCACCACTGGTGGAAACAACTTCACCTGCGAGTTCCTTTGTCACCTC
TTAGTTTCGTTACTGACTCCCCGAGTTCCCGACGCCTACGTCCGTCTGCT
TCACCACGACCCTATTTGTTCGTCCCTCATTTTTTTACCACTCCCTCTGC
TTGTCCCCCTTATTTTTATCTTATCGCCGCCCTCTTTTTTCTTCCCTCAC
TTTTTCCTCCCTCTATTTCCCCTTTTCCCCACTCCTCTTTTCCCCTTTTT
CCTCTCTCTCCTCTTTCCCCCCTCCTCTTCCTTTTTCCCTTTCTTTTTCC
CCCCCCCTTCCTCCCACTTCATCTTCTCTATTTTTCTTCCCATTTTTCTC
CCCTTTTCCACATATCCTTCTCTCTTATTTCCCCTCTTTTTCCTCTCTCC
CTTATCCCCTCTTTCCCCCCTTCCCTTTTTATCTTN

Query= MSMg01no475_d05.b1 MSMg01no475_d05.b1 CHROMAT_FILE:
MSMg01no475_d05.b1 PHD_FILE: MSMg01no475_d05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:54 2005
         (232 letters)



>mm_chr2_21139614_21140245
          Length = 632

 Score =  449 bits (232), Expect = e-131
 Identities = 232/232 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgaataatcgaaatgatataagtagattgaaacagtagaggagggattaaatattgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 catgaataatcgaaatgatataagtagattgaaacagtagaggagggattaaatattgat 373

                                                                       
Query: 61  gtacatctatgagctatttaaaattatgctcataattattgacagatttgtacaatcctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gtacatctatgagctatttaaaattatgctcataattattgacagatttgtacaatcctg 313

                                                                       
Query: 121 ttcatttgtctgtgtatacgtgtgtttatgtgtgagggtggttatgcatatgtgaagggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ttcatttgtctgtgtatacgtgtgtttatgtgtgagggtggttatgcatatgtgaagggc 253

                                                               
Query: 181 aggtcagcctcaggtttctttccttaggtgcagtctaacttggtttgtttgg 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 aggtcagcctcaggtttctttccttaggtgcagtctaacttggtttgtttgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no475_d05.g1 MSMg01no475_d05.g1 CHROMAT_FILE:
MSMg01no475_d05.g1 PHD_FILE: MSMg01no475_d05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:54 2005
         (231 letters)



>mm_chr2_20988822_20989452
          Length = 631

 Score =  427 bits (221), Expect = e-124
 Identities = 227/229 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtgccctgagcactaagaaaagcacctggcatgcagcagtcaacgacacttgcaggat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgtgccctgagcactaagaaaagcacctggcatgcagcagtcaacgacacttgcaggat 260

                                                                       
Query: 61  gctctcttctaccgtctgctgtggtctgaagcaattctgcgtgcacctgctgtttcctaa 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctctcttctaccatctgctgtggtctgaagcaattctgcgtgcacctgctgtttcctaa 320

                                                                       
Query: 121 ctctgggttcatgcgtagttactcaatacactgaatacgtgtaaattttgtgcttagtgg 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctctgggttcgtgcgtagttactcaatacactgaatacgtgtaaattttgtgcttagtgg 380

                                                            
Query: 181 ttgtggtccactgcaaccccacggctcaggactgcaacccaaggggcca 229
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgtggtccactgcaaccccacggctcaggactgcaacccaaggggcca 429


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 631
Length adjustment: 9
Effective length of query: 222
Effective length of database: 622
Effective search space:   138084
Effective search space used:   138084
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)