BAC Information

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BAC

Clone NameMSMg01-475D16
Chromosome2 (Build37)
Map Location 114,486,013 - 114,486,205
singlet/doubletsinglet
Overlap genenone
Upstream geneFmn1, Grem1, LOC100043520, Scg5, Arhgap11a, LOC100043526, Gja9, A530058N18Rik, Actc1, Aqr, Zfp770, Atpbd4
Downstream geneLOC100043219, LOC100043222, LOC100043232, LOC100043236, BC052040
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475D16.T7 (MSMg01no475_d16.b1)MSMg01-475D16.TJ (MSMg01no475_d16.g1)
ACCAG557104AG557105
length735842
length of high quality
(start - end)
574 (47 - 620)194 (76 - 269)
definitionCHROMAT_FILE: MSMg01no475_d16.b1 PHD_FILE: MSMg01no475_d16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:56 2005CHROMAT_FILE: MSMg01no475_d16.g1 PHD_FILE: MSMg01no475_d16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTCCTATATTCAGAGGATCCGCGGAATTCAAGGCCCTTTCCTAAACATG
ATAAAACCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGA
GAAGTTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCAC
TTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATT
CGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAA
AATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAA
ATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTAAAGTAGCT
GGATATAAAATAAACTCAAACAAGTCAATGGCCTTTCTCTATACAAAGAA
TAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCA
CAAATAATATAAAATATCTTGGCATGACTCTAACTAAGGAAGTGAAAGAT
CTGTATGATTAAAACTTCAAATCTCTGAAGAAAGAAATTAAGGAAGATCT
CAGAAGATGGAAAGATCTCCCATGCTCATGGATTGGCAGGATCAACATTG
TAAAAATGGCTATCTTGCCCAAAGCAATCTACAGATTCCATGCAATCCCC
ATCAAAATTCCCACTCCATTCTTCAACGAATTGGAAGGAGCAATTTGGCA
ATTTTGCCTGGAATACTTAAAACCCAGGATAGCTA
TTCGATGCTATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTAGGTCTTCAGCATCAGGATGGG
ATCTGTGTGGTATCGAGCTTAGTGGGCCTTGGAGCTATAGGCTCTTATGA
TCTCCCCTGTGAAGACAGCCACTTTTGACCTACTCAGATTGTGTCATGTC
TACCAATCTAATAACTCCCCCTTTTAATATATATATTAAAATGTATATAT
ATATATATATATATGTGCGCATATATCGCCTCCTTTTTTTTCCTCCCCCT
TCTCCCCCCATTTCTTTTTTCTTTTTTCCCCCTCTCTTTTCCTTCTTCTC
TTCTTTCCCCTCCCCTCTTTTCCCCCCCCCTTTTTCCCCTCCCCCCCCCC
CCCTTTTTTTCTTTTTTTTTCCCCCCCCTCTCTTCTTCCCTTTCTTTTTT
TTTTCCCCATCCCCTTCCTCCCTCTTTCCTTCTTTCCCGTCTTTTCTCTC
CCCCCCTCTTCTTTTTTTTTTCCCCCCCATTTCTTCCTTTCCCTCCTCTT
TTTTCATCTCTCCCTTCCCCCCCTTTCCCTCTCTCTCTTTCTCCCTCCCC
CTTCCCCCTTTTTCCTCCTTCTTTCCCCTCCCTTATCCATTTTCTCCCAT
CCATCCCCTTTCCCCTCCATTTCTCTTCCCCTCTCCCCTCCTCTTTTTTC
TTTTTTTTCTTTCCCTTCCCTCTCTCCTTTTCCTCTCCCTTTTCCTCCTT
TTTCTCTCTCTTTCCTCCCCTCACCCTTTCTTTTTTTCTCCCTCTTCCCC
CTTTTTTTCTCATTTCTGCCCCCTTTCCCTCTCTCTCCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_d16.g1 MSMg01no475_d16.g1 CHROMAT_FILE:
MSMg01no475_d16.g1 PHD_FILE: MSMg01no475_d16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:56 2005
         (194 letters)



>mm_chr2_114485851_114486448
          Length = 598

 Score =  323 bits (167), Expect = 4e-93
 Identities = 185/193 (95%), Gaps = 4/193 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctaggtcttcagcatcaggatgggatctgtgtggtatcgagcttagtgggccttggagc 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 355 tctaggtcttcagcatcaggatgggatatgtgtggtatcgagcttagtgggccttggagc 296

                                                                       
Query: 61  tataggctcttatgatctcccctgtgaagacagccacttttgacctactcagattgtgtc 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 295 tataggctcttatgatctcccctgtgaagacagccacttttggcctactcagattgtgtc 236

                                                                       
Query: 121 at----gtctaccaatctaataactcccccttttaatatatatattaaaatgtatatata 176
           ||    |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 235 attcatgtctaccaatctaataactcccccttttaatatatatattaaaatggatatata 176

                        
Query: 177 tatatatatatat 189
           |||| ||||||||
Sbjct: 175 tatacatatatat 163


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 598
Length adjustment: 8
Effective length of query: 186
Effective length of database: 590
Effective search space:   109740
Effective search space used:   109740
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)