BAC Information

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BAC

Clone NameMSMg01-475D24
Chromosome2 (Build37)
Map Location 160,904,300 - 160,904,626
singlet/doubletsinglet
Overlap geneChd6
Upstream geneGm826, Mafb, LOC100043892, Top1, Plcg1, Zhx3, Lpin3, Emilin3
Downstream geneLOC100043693, LOC100043694, LOC383769, LOC629655, LOC383770, Ptprt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475D24.T7 (MSMg01no475_d24.b1)MSMg01-475D24.TJ (MSMg01no475_d24.g1)
ACCAG557120AG557121
length1,999760
length of high quality
(start - end)
---355 (87 - 441)
definitionCHROMAT_FILE: MSMg01no475_d24.b1 PHD_FILE: MSMg01no475_d24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:58 2005CHROMAT_FILE: MSMg01no475_d24.g1 PHD_FILE: MSMg01no475_d24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GATACATATACCCGCGCGCATCTCGCTGTCTCGCCCCCATAGCGCCACGC
AATATCCTATGCGCACAAATATCTCTTATAGTTGTTGTCCTGTCCTTATA
TCGCGCAACGCACTCGGTCTCTCCTCTCGGCACACTCACTCATTCTCCTG
GTAGATAGCATGACCGATTATGTGCGCGCAGCGACGGTTCTGTCGCAGTC
ACACACCTCTACATATTGTATAGATTATACATCGTATAATCATCATAGAG
ACAGCGTGATAACGCATGGACCGACACTAACACGATACGTATCGCGATGG
CGCGTACAGACTATCGAGGCGATACTATCGGAGCTCGTAGATAGGCATCT
ACTCACGCCCGCAGAACACGCGANATGTGAGTCGGATTACATCTCACGAT
TAGCTGCGCCTACGATTTATACTCACTGTATATACTCGACCGCGATACTC
CCATGGACCCATAATAGCTTGACTTCATACTATTACAACTGTACCTACCA
GAGCAGTGGTATGGTATGAGTATGCACTGGATAGAGCATGACGCCAATGT
GGATGCTCGCTGGATGTCTCCTATATTATTATCAATATAAGACATGTGCA
TACTATGAAGATATCTTACAACGCACGCTGCCCCGAGACCAACAGAGCCG
ACGTATGATATATATATACATCGGCCAGATGGATGAGAGCACAACAACAT
GCGAGTGCGANATAGCACTGTGCGATGTTGCTGCGTACGGCTATAGATAC
TGCGGTTAGACGACCAGCTCACACGTGTAGACTATTCTACTAATCGTCAC
GATCCCACAGCACGCTACACGCTCATCGCACCGCGAGNGAGANTAGTATA
TGTGGATTCACCGATGNACCATGTGCGCGTCTCGTCTCATGCCGTCCGCA
AGTCACACTATGCTGATCGATCCGAGCGCACACACAGCGCACATATTCNA
CGACTCACTACATAGACGATCGTGCTGTACTGTCTGATTACACACCATGA
TGTACTNCNCGATACTACTGGATGATGATACTACGAGATCAGTGATACTG
ATATCGTTTATCNCGCACGCAGCTGACTCTGAACGCTTAGCCTACTATAA
ATAACATCATGATATATATTGTNGCTANATGTGTATAGTGGGTGATCGAG
AGCATACACACAGGATGGTCGGTANGTTAGTATGTGCAGCGCCTATGACG
TGAGAATATATAGATATGATTNATATAGACATCGATATCGTNGACGACGA
CATTATCACAGNATGAGCGTGTGGATCAATCGAACCAACATGCAGCACAC
GATGNGTACAGACACATAGCTTGATAGCATCGACGCGGCGCTAGCGACAC
AGCGTACTNGNGATACACACACAGCACCAGCAGATGGCGAGNTACTAGGT
GGTTAGTACTCTGCTCGACGCACATCACGACGTATATACTACTACATNCN
AGTGCACGTANAGACGCTACGCCACGCATCAGCGATCATGATCNATATAT
ACATTGTCGTGAGTACTGTATATGTCGACACGTAGCGTCTGGTCGACTCA
TGCACTCTATGCATCNGTCGCTACGGATACGGATATATATGTATATAACG
CATCGATATGNGCCATAACCGCAGATGTGCTATGACTCACGTACGCGTAG
ATCANTACAGTAGCCGATCCGATANAGTGTNAGAGTGTCAATANGACAAA
ATGTCGACGTCGCACATATNTCGAGATANCGAGTCGGTCGAAGACCGCAG
CGATAGATAGACGACTGTCGCAGACATATCGCGNCGAATGNGNACGATAT
CTCTCATCTNATCCGATATCGTATGTACTGATGTGTGATCAGATAATACA
GCGATATAGACATGCTGACGACACGACAGNTCGATATCGTGNTNCATACG
CGNCNACACTACAAATATGAACGACGCGTGTTCGTCAGTGTAGATGCGTG
TGTACTCNCACCTAGCGATACGACAATCGTACTATCTCACGCACTNCTN
NTTCCTTCGAATATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACTTATGCACAG
TGACTCTTACTCTTTGAGCCATTTCTCCAGCCCTACTGTTGTACCTATTA
TCATCAGCTCTTGAATAGCAACTTTTGAGCTTTTTTTTTTTTTTTTTGCC
ACCAGTTATCATTGTTTCAGTTTGAATCTGATGTCTTCAACACGCTCATG
TTTTGAATGTTTGGTTCTCAGCTCTTGGTGCTGTTTGGGGAGTCCGTGAA
ACCTAGCTAGCAAAAGTGACTGGAGACAAGCCTTTGAATGTTTCCATGGC
CTCTCCCTTTCTCCTCACTTCCTGGTCTGTGAGGTGAAAGCTTGTCACAC
CATCTACTTCAGGACTGCTGCTCTACTGTGCCTTCCCTGGTATGCAGTGT
TCAGCAGACTTTCCGAGATAAACCCGGAGCCCACAAAAAAGATTCTTTAA
GTTGTTTTTATATGCGCGTGAGGCCCTGGCTAAAACCCTTCTGACTGGTT
CCTGGGGCTCAAAATTGGGAGTTTCCCTGGCTACATCTTACAATCTGTGC
TTTTCTCTTGTCCATCCACTCTTCTCCCGATTTCTTTATTCCTCTCTTCC
CCCCCCCTTTCCTTCCCCTTTTCCCCTATTCCGTCTCCATTTTCCCTCCC
CTTCTTTTTTCCCCCCTCCCCCTTTTTTTTCCTTTCCCCCCCTTTCTCCC
CCTTCCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_d24.g1 MSMg01no475_d24.g1 CHROMAT_FILE:
MSMg01no475_d24.g1 PHD_FILE: MSMg01no475_d24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:58 2005
         (355 letters)



>mm_chr2_160904300_160905055
          Length = 756

 Score =  594 bits (307), Expect = e-174
 Identities = 322/327 (98%), Gaps = 1/327 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcacttatgcacagtgactcttactctttgagccatttctccagccctactgttgtacct 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 327 tcacttatgcacagtgactcttactctttgagccatttctccagtcctactgttgtacct 268

                                                                       
Query: 61  attatcatcagctcttgaatagcaacttttgag-ctttttttttttttttttgccaccag 119
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 267 attatcatcagctcttgaatagcaacttttgagcctttttttttttttttttgccaccag 208

                                                                       
Query: 120 ttatcattgtttcagtttgaatctgatgtcttcaacacgctcatgttttgaatgtttggt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ttatcattgtttcagtttgaatctgatgtcttcaacacgctcatgttttgaatgtttggt 148

                                                                       
Query: 180 tctcagctcttggtgctgtttggggagtccgtgaaacctagctagcaaaagtgactggag 239
           ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 147 tctcagctcttggtgctgtttggggagtcggtgaaacctagctaggaaaagtgactggag 88

                                                                       
Query: 240 acaagcctttgaatgtttccatggcctctccctttctcctcacttcctggtctgtgaggt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87  acaagcctttgaatgtttccatggcctctccctttctcctcacttcctggtctgtgaggt 28

                                      
Query: 300 gaaagcttgtcacaccatctacttcag 326
           |||||||||||||||||||||| ||||
Sbjct: 27  gaaagcttgtcacaccatctacctcag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 756
Length adjustment: 9
Effective length of query: 346
Effective length of database: 747
Effective search space:   258462
Effective search space used:   258462
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)